Factsheet for Bra027529.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13125	Canola	cytosol	92.57	80.38
Bra023903.1-P	Field mustard	extracellular, golgi	53.25	41.95
Bra001812.1-P	Field mustard	golgi	50.15	38.85
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	43.65	33.98
VIT_09s0054g00620.t01	Wine grape	golgi	40.87	30.99
KRH44609	Soybean	nucleus	38.7	30.49
Os04t0487100-01	Rice	mitochondrion	39.01	30.0
TraesCS2A01G345800.1	Wheat	golgi	38.39	29.81
TraesCS2B01G364200.1	Wheat	golgi	38.08	29.64
HORVU2Hr1G084190.4	Barley	golgi	37.77	29.26
EES11025	Sorghum	golgi	37.46	29.09
TraesCS2D01G344500.1	Wheat	golgi	37.15	28.92
Solyc03g123910.2.1	Tomato	extracellular	36.53	28.85
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	34.98	26.65
PGSC0003DMT400068730	Potato	cytosol	4.95	26.23
Zm00001d003246_P001	Maize	golgi	37.46	25.26
PGSC0003DMT400023756	Potato	cytosol	15.48	18.59
GSMUA_Achr6P28410_001	Banana	nucleus	38.08	15.57

Protein Annotations

MapMan:19.3.3.4	Gene3D:3.30.1460.50	InterPro:Autophagy-rel_prot_3_N	EnsemblPlantsGene:Bra027529	EnsemblPlants:Bra027529.1	EnsemblPlants:Bra027529.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4EFG7	PFAM:PF03986	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137
SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI00025427CF	SEG:seg	:	:

Description

AT1G51540 (E=1e-048) | INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species: Archae - 11; Bacteria - 200; Metazoa - 1128; Fungi - 24; Plants - 53; Viruses - 41; Other Eukaryotes - 114 (source: NCBI BLink).

Coordinates

chrA09:+:13565242..13568836

Molecular Weight (calculated)

36242.4 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.428

Length

323 amino acids

Sequence
(BLAST)

001: MVLSQKIHGA FKGAVERMTG PRTVSDFKEK GVLSVSEFIL ADDNLVSKYP TWEAGDPSNR KPYLPSQKQF LITKNGRCQI RDRQREMARQ AGKQNCGRLV
101: LVSCLALLAV GLVADFLWAS SHRFSPAGTY LPSSFTTIIG QLPPESNEKD TKQKEEDKAE ERKLSATFQD LDAPQLQWEK MAAAPVPRLD GAAIQIMNLL
201: YVFSGYGNIN LVRSHVDVYN FVDNKWGGRF DMPKEMAHSH LGMVTDGRFM GNRPIPTSTR VNGPDQYINI ACVVVDDRIF VIGGQEGDFM AKPGSPIFKC
301: SCRLEVKKSE REEHWEWKDH GSL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.