Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37314 | Canola | extracellular, golgi | 98.05 | 98.05 |
| Bra001812.1-P | Field mustard | golgi | 91.71 | 90.17 |
| AT1G51540.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 86.1 | 85.06 |
| PGSC0003DMT400023756 | Potato | cytosol | 54.39 | 82.9 |
| PGSC0003DMT400068730 | Potato | cytosol | 11.46 | 77.05 |
| KRH44609 | Soybean | nucleus | 73.66 | 73.66 |
| VIT_09s0054g00620.t01 | Wine grape | golgi | 76.1 | 73.24 |
| Solyc03g123910.2.1 | Tomato | extracellular | 72.44 | 72.62 |
| Os04t0487100-01 | Rice | mitochondrion | 71.95 | 70.24 |
| EES11025 | Sorghum | golgi | 70.98 | 69.95 |
| TraesCS2A01G345800.1 | Wheat | golgi | 70.24 | 69.23 |
| TraesCS2D01G344500.1 | Wheat | golgi | 70.0 | 69.16 |
| TraesCS2B01G364200.1 | Wheat | golgi | 69.76 | 68.92 |
| HORVU2Hr1G084190.4 | Barley | golgi | 69.76 | 68.59 |
| Bra025259.1-P | Field mustard | endoplasmic reticulum, golgi, mitochondrion | 61.71 | 59.67 |
| Zm00001d003246_P001 | Maize | golgi | 68.05 | 58.25 |
| Bra027529.1-P | Field mustard | cytosol | 41.95 | 53.25 |
| GSMUA_Achr6P28410_001 | Banana | nucleus | 71.71 | 37.22 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EnsemblPlantsGene:Bra023903 | EnsemblPlants:Bra023903.1 | EnsemblPlants:Bra023903.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | UniProt:M4E549 |
| PFAM:PF01344 | PFAM:PF13418 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF137 | SUPFAM:SSF117281 | TMHMM:TMhelix |
| UniParc:UPI0002544713 | SEG:seg | : | : | : | : |
Description
AT1G51540 (E=8e-200) | INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing protein (TAIR:AT3G27220.1); Has 1571 Blast hits to 1365 proteins in 151 species: Archae - 11; Bacteria - 200; Metazoa - 1128; Fungi - 24; Plants - 53; Viruses - 41; Other Eukaryotes - 114 (source: NCBI BLink).
Coordinates
chrA01:-:20924529..20926277
Molecular Weight (calculated)
46260.0 Da
IEP (calculated)
9.512
GRAVY (calculated)
-0.297
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MARQAGKQSY GRLVLVSCLA LLAVGLIADF LWASSHRFSP AGTYLPSSVI GQLPPESNEK DTKTKERKLS ATFQDLDAPQ LQWEKMAAAP VPRLDGAAIQ
101: IRNLLYVFAG YGNINLVHSH VDIYNFVDNK WGGRFDMPKE MAHSHLGMVT DGRYIYIVTG QYGPQCRGPT AKTFVLDTDT NTWSDFIPLP VPRYAPATQL
201: WRGRLHVMGG NKENRHTPGL EHWSIAVKEG KALEKEWRSE IPIPRGGPHR ACVVVDDRLF VIGGQEGDFM AKPGSPIFKC SRRLEVVFSD VYMLDEEMKW
301: KVMPSLPKPD SHIEFAWKVV NNSIVIVGGT TEKHPETKKM VLVGEILQFN LNTMKWYVIG KLPYRVKTTL VGYWDGQLYF TSGQRDKGPD DPAPRKVVAE
401: MWRTKLILYP
101: IRNLLYVFAG YGNINLVHSH VDIYNFVDNK WGGRFDMPKE MAHSHLGMVT DGRYIYIVTG QYGPQCRGPT AKTFVLDTDT NTWSDFIPLP VPRYAPATQL
201: WRGRLHVMGG NKENRHTPGL EHWSIAVKEG KALEKEWRSE IPIPRGGPHR ACVVVDDRLF VIGGQEGDFM AKPGSPIFKC SRRLEVVFSD VYMLDEEMKW
301: KVMPSLPKPD SHIEFAWKVV NNSIVIVGGT TEKHPETKKM VLVGEILQFN LNTMKWYVIG KLPYRVKTTL VGYWDGQLYF TSGQRDKGPD DPAPRKVVAE
401: MWRTKLILYP
001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
Arabidopsis Description
At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.