Factsheet for PGSC0003DMT400068730

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023756	Potato	cytosol	91.8	20.82
Solyc03g123910.2.1	Tomato	extracellular	90.16	13.45
EES11025	Sorghum	golgi	85.25	12.5
VIT_09s0054g00620.t01	Wine grape	golgi	86.89	12.44
KRH44609	Soybean	nucleus	83.61	12.44
TraesCS2D01G344500.1	Wheat	golgi	83.61	12.29
TraesCS2B01G364200.1	Wheat	golgi	83.61	12.29
TraesCS2A01G345800.1	Wheat	golgi	83.61	12.26
Os04t0487100-01	Rice	mitochondrion	83.61	12.14
HORVU2Hr1G084190.4	Barley	golgi	81.97	11.99
Bra023903.1-P	Field mustard	extracellular, golgi	77.05	11.46
CDY27540	Canola	extracellular, golgi	77.05	11.46
CDY37314	Canola	extracellular, golgi	77.05	11.46
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	75.41	11.08
Bra001812.1-P	Field mustard	golgi	75.41	11.03
CDX82217	Canola	golgi	75.41	11.03
CDY32405	Canola	golgi	75.41	10.98
CDY13125	Canola	cytosol	65.57	10.75
PGSC0003DMT400052239	Potato	extracellular, golgi	70.49	10.26
Zm00001d003246_P001	Maize	golgi	80.33	10.23
GSMUA_Achr6P28410_001	Banana	nucleus	81.97	6.33
Bra027529.1-P	Field mustard	cytosol	26.23	4.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400068730	EnsemblPlantsGene:PGSC0003DMG400026726	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF13964	PGSC:PGSC0003DMG400026726
SUPFAM:SSF117281	UniParc:UPI000294AB6B	UniProt:M1CJE9	MapMan:35.1	:	:

Description

OJ991113_30.6 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026726]

Coordinates

chr10:+:47351567..47351950

Molecular Weight (calculated)

7102.6 Da

IEP (calculated)

9.126

GRAVY (calculated)

-0.475

Length

61 amino acids

Sequence
(BLAST)

1: MAHSHLGMVT DGRYIYVVTG QYGPQCRGPT ARNFVLDTKT KQWQDLPPLP VPRYHLYNYF C

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.