Factsheet for VIT_09s0054g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068730	Potato	cytosol	12.44	86.89
PGSC0003DMT400023756	Potato	cytosol	53.76	85.13
KRH44609	Soybean	nucleus	75.35	78.29
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	75.35	77.35
CDY27540	Canola	extracellular, golgi	73.94	76.83
CDY37314	Canola	extracellular, golgi	73.94	76.83
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	75.82	76.36
Bra023903.1-P	Field mustard	extracellular, golgi	73.24	76.1
Bra001812.1-P	Field mustard	golgi	73.94	75.54
CDX82217	Canola	golgi	73.71	75.3
Solyc03g123910.2.1	Tomato	extracellular	71.6	74.57
CDY32405	Canola	golgi	72.77	73.99
EES11025	Sorghum	golgi	71.83	73.56
TraesCS2D01G344500.1	Wheat	golgi	70.42	72.29
TraesCS2B01G364200.1	Wheat	golgi	69.72	71.57
HORVU2Hr1G084190.4	Barley	golgi	69.95	71.46
TraesCS2A01G345800.1	Wheat	golgi	69.72	71.39
Os04t0487100-01	Rice	mitochondrion	69.95	70.95
Zm00001d003246_P001	Maize	golgi	69.01	61.38
CDY13125	Canola	cytosol	43.66	50.0
Bra027529.1-P	Field mustard	cytosol	30.99	40.87
GSMUA_Achr6P28410_001	Banana	nucleus	73.0	39.37

Protein Annotations

EntrezGene:100258237	wikigene:100258237	Gene3D:2.120.10.80	MapMan:35.1	ProteinID:CBI18458	ProteinID:CBI18458.3
UniProt:D7SS26	EMBL:FN594972	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EntrezGene:LOC100258237	wikigene:LOC100258237
PFAM:PF01344	PFAM:PF13418	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	SMART:SM00612	SUPFAM:SSF117281
TIGR:TC54824	TMHMM:TMhelix	UniParc:UPI0001984006	ArrayExpress:VIT_09s0054g00620	EnsemblPlantsGene:VIT_09s0054g00620	EnsemblPlants:VIT_09s0054g00620.t01
unigene:Vvi.12681	RefSeq:XP_002265018	RefSeq:XP_002265018.1	RefSeq:XP_010655296.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:21409180..21419664

Molecular Weight (calculated)

47730.5 Da

IEP (calculated)

9.588

GRAVY (calculated)

-0.312

Length

426 amino acids

Sequence
(BLAST)

001: MVRSTPKHAS RTFVFVISCF GLLAAGLVAD LLWASSKSSS GYHSIATNWA FDDSRSTVIV PHQQPQKAKE GSDVKDKKKA DVPERVLSAT FADLPAPELE
101: WEKMAPAPVP RLDGAAIQIK NLLYVFAGYG TIDFVHSHVD VYNFTDNTWG GRFDMPKEMA HSHLGMVTDG RYIYVVTGQY GPQCRGPTAR TFVLDTKTKQ
201: WSDMPPLPVP RYAPATQLWR GRLHVMGGSG ENRHTPALEH WSLAVKNGKA LEKEWRSEIP IPRGGPHRAC IVVDDRLLVI GGQEGDFMAK PGSPIFKCSR
301: RNEVVFSDVY MLDDEMKWKN LPPMPKPDSH IEFAWVMVNH SIIIVGGTTE KHPITKKMVL VGEVFQFNLD SLKWSVIGKL PYRVKTTLAG FWNGWLYFTS
401: GQRDKGPDDP APKKVLGEMW RTKLSL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.