Factsheet for TraesCS2A01G345800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
extracellular 4
golgi 6
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G364200.1	Wheat	golgi	96.88	97.11
HORVU2Hr1G084190.4	Barley	golgi	96.39	96.16
TraesCS2D01G344500.1	Wheat	golgi	95.91	96.14
Os04t0487100-01	Rice	mitochondrion	87.98	87.14
EES11025	Sorghum	golgi	84.13	84.13
PGSC0003DMT400068730	Potato	cytosol	12.26	83.61
PGSC0003DMT400023756	Potato	cytosol	51.68	79.93
TraesCS7A01G312200.1	Wheat	cytosol	61.3	76.12
KRH44609	Soybean	nucleus	71.15	72.2
CDY37314	Canola	extracellular, golgi	70.19	71.22
CDY27540	Canola	extracellular, golgi	69.95	70.98
Zm00001d003246_P001	Maize	golgi	81.49	70.77
Bra023903.1-P	Field mustard	extracellular, golgi	69.23	70.24
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	71.39	70.21
VIT_09s0054g00620.t01	Wine grape	golgi	71.39	69.72
Solyc03g123910.2.1	Tomato	extracellular	68.27	69.44
CDX82217	Canola	golgi	69.47	69.3
CDY32405	Canola	golgi	69.71	69.21
Bra001812.1-P	Field mustard	golgi	68.99	68.82
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	67.07	67.23
Solyc02g093910.2.1	Tomato	extracellular, golgi	62.26	62.11
PGSC0003DMT400052239	Potato	extracellular, golgi	62.26	61.81
KRH07016	Soybean	endoplasmic reticulum, golgi	63.7	61.06
CDY13692	Canola	endoplasmic reticulum, golgi	61.78	60.61
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	60.82	59.67
KRG94441	Soybean	plastid	63.7	59.02
CDX83669	Canola	endoplasmic reticulum, golgi	60.34	58.92
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	60.1	58.69
CDY21813	Canola	mitochondrion	12.5	50.49
CDY13125	Canola	cytosol	42.31	47.31
GSMUA_Achr6P28410_001	Banana	nucleus	79.81	42.03
Bra027529.1-P	Field mustard	cytosol	29.81	38.39

Protein Annotations

EnsemblPlants:TraesCS2A01G345800.1	EnsemblPlantsGene:TraesCS2A01G345800	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF224	PFAM:PF01344
PFAM:PF13418	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr2A:+:584062908..584066628

Molecular Weight (calculated)

46539.0 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.334

Length

416 amino acids

Sequence
(BLAST)

001: MARPAAKALP PKHLVALAVV AILGLFLVAD YLWASSRSAA PSIWPSRVDI STRPTASPPP SANKQTKGNA STGSMDISAT FADLRAPELQ WEQMAEAPVP
101: RLDGAAIQIK NLLFVFAGYG TINYVHSHVD IYNFSDNTWG GKFDMPKEMA HSHLGMVTDG RYIYVVTGQY GPQCRGPTAR NFVLDTERKE WHDLPPLPVP
201: RYAPATQLWR GRLHVMGGSK EDRHEPGVEH WSLAVKDGKA LEQEWRSEIP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PGSPIFKCVR RSEMVYSDVY
301: MLDDEMKWKE LPPMPKPDSH IEFAWTNVNN SIIIAGGTTE KHPINKRMTL VGEVFRFNLE TLEWSVIGRL PFRIKTTLVG YWDGWLYFTS GQRDKGPSNP
401: SPKKVVGCMW RTKLHL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [golgi,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.