Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 4
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27540 | Canola | extracellular, golgi | 86.51 | 87.56 |
| CDY37314 | Canola | extracellular, golgi | 86.27 | 87.32 |
| Bra023903.1-P | Field mustard | extracellular, golgi | 85.06 | 86.1 |
| CDX82217 | Canola | golgi | 84.1 | 83.69 |
| Bra001812.1-P | Field mustard | golgi | 83.86 | 83.45 |
| PGSC0003DMT400023756 | Potato | cytosol | 53.49 | 82.53 |
| CDY32405 | Canola | golgi | 83.13 | 82.34 |
| PGSC0003DMT400068730 | Potato | cytosol | 11.08 | 75.41 |
| VIT_09s0054g00620.t01 | Wine grape | golgi | 77.35 | 75.35 |
| KRH44609 | Soybean | nucleus | 73.01 | 73.9 |
| Solyc03g123910.2.1 | Tomato | extracellular | 71.81 | 72.86 |
| EES11025 | Sorghum | golgi | 69.88 | 69.71 |
| Os04t0487100-01 | Rice | mitochondrion | 70.36 | 69.52 |
| TraesCS2D01G344500.1 | Wheat | golgi | 67.95 | 67.95 |
| HORVU2Hr1G084190.4 | Barley | golgi | 67.95 | 67.63 |
| TraesCS2B01G364200.1 | Wheat | golgi | 67.23 | 67.23 |
| TraesCS2A01G345800.1 | Wheat | golgi | 67.23 | 67.07 |
| AT3G27220.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 61.69 | 60.09 |
| Zm00001d003246_P001 | Maize | golgi | 67.47 | 58.46 |
| CDY13125 | Canola | cytosol | 47.71 | 53.23 |
| Bra027529.1-P | Field mustard | cytosol | 33.98 | 43.65 |
| GSMUA_Achr6P28410_001 | Banana | nucleus | 70.12 | 36.84 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:841579 | ProteinID:AEE32681.1 | EMBL:AK227508 | ArrayExpress:AT1G51540 |
| EnsemblPlantsGene:AT1G51540 | RefSeq:AT1G51540 | TAIR:AT1G51540 | RefSeq:AT1G51540-TAIR-G | EnsemblPlants:AT1G51540.1 | TAIR:AT1G51540.1 |
| Unigene:At.37796 | EMBL:BT004632 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019005 |
| GO:GO:0019538 | GO:GO:0030162 | GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_175565.2 | PFAM:PF01344 | PFAM:PF13418 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR24413 |
| PANTHER:PTHR24413:SF137 | UniProt:Q84VX7 | SUPFAM:SSF117281 | TMHMM:TMhelix | UniParc:UPI000000C3F4 | SEG:seg |
Description
At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
Coordinates
chr1:+:19115557..19117534
Molecular Weight (calculated)
46749.7 Da
IEP (calculated)
9.816
GRAVY (calculated)
-0.285
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.