CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82217	Canola	golgi	95.23	95.68
Bra001812.1-P	Field mustard	golgi	94.27	94.72
CDY27540	Canola	extracellular, golgi	88.78	90.73
CDY37314	Canola	extracellular, golgi	88.31	90.24
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	82.34	83.13
PGSC0003DMT400023756	Potato	cytosol	53.22	82.9
PGSC0003DMT400068730	Potato	cytosol	10.98	75.41
KRH44609	Soybean	nucleus	72.55	74.15
VIT_09s0054g00620.t01	Wine grape	golgi	73.99	72.77
Solyc03g123910.2.1	Tomato	extracellular	70.17	71.88
EES11025	Sorghum	golgi	70.64	71.15
Os04t0487100-01	Rice	mitochondrion	70.88	70.71
HORVU2Hr1G084190.4	Barley	golgi	69.93	70.26
TraesCS2A01G345800.1	Wheat	golgi	69.21	69.71
TraesCS2D01G344500.1	Wheat	golgi	68.97	69.64
TraesCS2B01G364200.1	Wheat	golgi	68.97	69.64
CDY13125	Canola	cytosol	54.89	61.83
CDY13692	Canola	endoplasmic reticulum, golgi	61.58	60.85
CDX83669	Canola	endoplasmic reticulum, golgi	61.81	60.8
Zm00001d003246_P001	Maize	golgi	68.5	59.92
CDY06408	Canola	cytosol	10.02	58.33
CDY21813	Canola	mitochondrion	13.13	53.4
GSMUA_Achr6P28410_001	Banana	nucleus	69.21	36.71

Protein Annotations

EnsemblPlants:CDY32405	EnsemblPlantsGene:GSBRNA2T00051993001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF01344
PFAM:PF13418	ProteinID:CDY32405	ProteinID:CDY32405.1	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix
UniParc:UPI0004EB6A1A	UniProt:A0A078H123	MapMan:35.1	:	:	:

Description

BnaC03g41890DBnaC03g41890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H123]

Coordinates

chrLK032294:+:163503..165580

Molecular Weight (calculated)

47203.2 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.288

Length

419 amino acids

Sequence
(BLAST)

001: MVKPAGKQSC GRLVFASFLA LLAFGLVADF LWASSHRFSS AMISLPSSVT TVVGKLPPSS NEKDTKKKKN DSARERKLSA TFQDLPAPQL HWEKMSAAPV
101: PRLDGAAIQI RNFLYVFAGY GNINLVHSHV DMYNFVDNTW GGRFDMPKEM AHSHLGMVTD GRFIYIVTGQ YGPQCRGPTA KTFVLDTDTN TWSDFIPLPV
201: PRYAPATQLW RGRLHVMGGS KENRHTPGLE HWSIAVKDGK ALEREWRSEI PIPRGGPHRA CVVVDDKLFV IGGQEGDFMA KPGSPIFKCS RRLEVVFSDV
301: YMLDEEMKWK VMPSMPKPDS HIEFAWKVVN NSIVIVGGTT EKHPETKKMV LVGEIFQFNL NTMKWYVIGK LPYRVKTTLV GYWEGNLYFT SGQRDKGPED
401: PAPRKVIAEM WRTKLILNP

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.