Factsheet for PGSC0003DMT400023756

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068730	Potato	cytosol	20.82	91.8
Solyc03g123910.2.1	Tomato	extracellular	98.51	64.79
KRH44609	Soybean	nucleus	88.1	57.8
CDY27540	Canola	extracellular, golgi	84.76	55.61
CDY37314	Canola	extracellular, golgi	83.64	54.88
Bra023903.1-P	Field mustard	extracellular, golgi	82.9	54.39
Bra001812.1-P	Field mustard	golgi	83.64	53.96
VIT_09s0054g00620.t01	Wine grape	golgi	85.13	53.76
CDX82217	Canola	golgi	83.27	53.72
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	82.53	53.49
CDY32405	Canola	golgi	82.9	53.22
EES11025	Sorghum	golgi	82.16	53.12
TraesCS2D01G344500.1	Wheat	golgi	80.3	52.05
HORVU2Hr1G084190.4	Barley	golgi	80.67	52.04
Os04t0487100-01	Rice	mitochondrion	81.04	51.9
TraesCS2A01G345800.1	Wheat	golgi	79.93	51.68
TraesCS2B01G364200.1	Wheat	golgi	79.55	51.57
PGSC0003DMT400052239	Potato	extracellular, golgi	75.09	48.21
Zm00001d003246_P001	Maize	golgi	77.7	43.63
GSMUA_Achr6P28410_001	Banana	nucleus	81.04	27.59
CDY13125	Canola	cytosol	37.17	26.88
Bra027529.1-P	Field mustard	cytosol	18.59	15.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400023756	EnsemblPlantsGene:PGSC0003DMG401009190	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF01344
PFAM:PF13964	PGSC:PGSC0003DMG401009190	SEG:seg	SUPFAM:SSF117281	UniParc:UPI00029586C1	UniProt:M1AIY0
MapMan:35.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401009190]

Coordinates

chr3:-:61954692..61959363

Molecular Weight (calculated)

30733.2 Da

IEP (calculated)

9.849

GRAVY (calculated)

-0.494

Length

269 amino acids

Sequence
(BLAST)

001: MAHSHLGMVT DGRYIYVVTG QYGPQCRGPT ARNFVLDTKT KQWQDLPPLP VPRYAPATQL WRGRLHVMGG SKENRHTPGL EHWSIAVKDG KALETEWRTE
101: IPIPRGGPHR ACVVFDDRLY VLGGQEGDFM AKPGSPIFKC SRRNEVVYDD VYMLDDDMTW KVLPPMPKPD SHIEFAWAIV NRSLVIVGGT TEKHPNTKKM
201: TLVGEILQFQ FDTQTWKVLG KLPYRVKTTL VGFWNGWLYF TSGQRDKGPD DPSPRKVIGE MWRTKLKLL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.