Factsheet for Solyc03g123910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023756	Potato	cytosol	64.79	98.51
PGSC0003DMT400068730	Potato	cytosol	13.45	90.16
KRH44609	Soybean	nucleus	75.79	75.61
CDY27540	Canola	extracellular, golgi	73.84	73.66
CDY37314	Canola	extracellular, golgi	73.11	72.93
Bra023903.1-P	Field mustard	extracellular, golgi	72.62	72.44
Bra001812.1-P	Field mustard	golgi	73.35	71.94
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	72.86	71.81
VIT_09s0054g00620.t01	Wine grape	golgi	74.57	71.6
CDX82217	Canola	golgi	72.86	71.46
EES11025	Sorghum	golgi	71.39	70.19
CDY32405	Canola	golgi	71.88	70.17
Os04t0487100-01	Rice	mitochondrion	70.9	69.05
TraesCS2D01G344500.1	Wheat	golgi	69.68	68.67
HORVU2Hr1G084190.4	Barley	golgi	69.93	68.59
TraesCS2A01G345800.1	Wheat	golgi	69.44	68.27
TraesCS2B01G364200.1	Wheat	golgi	68.95	67.95
Solyc02g093910.2.1	Tomato	extracellular, golgi	65.28	64.03
Zm00001d003246_P001	Maize	golgi	67.73	57.83
CDY13125	Canola	cytosol	41.08	45.16
Bra027529.1-P	Field mustard	cytosol	28.85	36.53
GSMUA_Achr6P28410_001	Banana	nucleus	70.17	36.33

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR015915
UniProt:K4BN89	InterPro:Kelch-typ_b-propeller	PFAM:PF13418	PFAM:PF13964	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137
SUPFAM:SSF117281	EnsemblPlantsGene:Solyc03g123910.2	EnsemblPlants:Solyc03g123910.2.1	TMHMM:TMhelix	UniParc:UPI0002765DFC	SEG:seg

Description

No Description!

Coordinates

chr3:-:70609245..70613685

Molecular Weight (calculated)

45978.5 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.250

Length

409 amino acids

Sequence
(BLAST)

001: MRIGKATSSS TTKLVFLCVA LLGTFLLVDL LWASSSSFNW PLPPSSNLLF FPNNTLPISN KKGGDARILS ATFADLPAPL LNWEKMAPSP VPRLDGAALQ
101: INDLLFVFAG YGTIDHVHSH VDIYNFTANS WGGTFDMPKE MAHSHLGMVT DGRYIYVVTG QYGPQCRGPT ARNFVLDTKT KQWQDLPPLP LPRYAPATQL
201: WRGRLHVMGG SKENRHTPGL EHWSIAVKDG KALETEWRAE IPIPRGGPHR ACVVFDDRLY VFGGQEGDFM AKPGSPIFKC SRRNEVVYDD VYMLDDDMTW
301: KVLTPMPKPD SHIEFAWAIV NRSLVIVGGT TEKHPNTKKM TLVGEILQFQ FDTQTWKVLG KLPYRVKTTL VGFWNGWLYF TSGQRDKGPD DPSPRKVIGE
401: MWRTKLKLL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.