CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27540	Canola	extracellular, golgi	98.54	98.54
Bra023903.1-P	Field mustard	extracellular, golgi	98.05	98.05
CDX82217	Canola	golgi	92.2	90.65
CDY32405	Canola	golgi	90.24	88.31
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	87.32	86.27
PGSC0003DMT400023756	Potato	cytosol	54.88	83.64
PGSC0003DMT400068730	Potato	cytosol	11.46	77.05
KRH44609	Soybean	nucleus	74.15	74.15
VIT_09s0054g00620.t01	Wine grape	golgi	76.83	73.94
Solyc03g123910.2.1	Tomato	extracellular	72.93	73.11
Os04t0487100-01	Rice	mitochondrion	72.93	71.19
EES11025	Sorghum	golgi	71.46	70.43
TraesCS2A01G345800.1	Wheat	golgi	71.22	70.19
TraesCS2D01G344500.1	Wheat	golgi	70.98	70.12
TraesCS2B01G364200.1	Wheat	golgi	70.73	69.88
HORVU2Hr1G084190.4	Barley	golgi	70.73	69.54
CDY13125	Canola	cytosol	56.34	62.1
CDY13692	Canola	endoplasmic reticulum, golgi	62.68	60.61
CDX83669	Canola	endoplasmic reticulum, golgi	62.2	59.86
CDY06408	Canola	cytosol	10.49	59.72
Zm00001d003246_P001	Maize	golgi	68.78	58.87
CDY21813	Canola	mitochondrion	13.41	53.4
GSMUA_Achr6P28410_001	Banana	nucleus	72.68	37.72

Protein Annotations

EnsemblPlants:CDY37314	EnsemblPlantsGene:GSBRNA2T00063837001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	PFAM:PF01344
PFAM:PF13418	ProteinID:CDY37314	ProteinID:CDY37314.1	SEG:seg	SUPFAM:SSF117281	TMHMM:TMhelix
UniParc:UPI0004EED1FF	UniProt:A0A078HJ00	MapMan:35.1	:	:	:

Description

BnaA01g25340DBnaA01g25340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ00]

Coordinates

chrLK032397:-:282882..284994

Molecular Weight (calculated)

46362.2 Da

IEP (calculated)

9.604

GRAVY (calculated)

-0.305

Length

410 amino acids

Sequence
(BLAST)

001: MARQAGKQSY GRLVLVSCLA LLAVGLIADF LWASSHRFSP AGTYLPSSLI QKLPPESNEK DTKTKERKLS ATFQDLEAPQ LQWEKMAAAP VPRLDGAAIQ
101: IRNLLYVFAG YGNINLVHSH VDIYNFVDNK WGGRFDMPKE MAHSHLGMVT DGRYIYIVTG QYGPQCRGPT AKTFVLDTDT NTWSDFIPLP VPRYAPATQL
201: WRGRLHVMGG SKENRHTPGL EHWSIAVKDG KALEKEWRSE IPIPRGGPHR ACVVVDDRLF VIGGQEGDFM AKPGSPIFKC SRRLEVVFSD VYMLDEEMKW
301: KVMPPLPKPD SHIEFAWKVV NNSIVIVGGT TEKHPETKKM VLVGEIFQFN LNTMKWYVIG KLPYRVKTTL VGYWDGQLYF TSGQRDKGPD DPAPRKVVAE
401: MWRTKLILYP

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.