CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06408	Canola	cytosol	24.27	34.72
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	67.96	16.51
CDY13692	Canola	endoplasmic reticulum, golgi	67.96	16.51
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	67.96	16.43
CDX83669	Canola	endoplasmic reticulum, golgi	66.99	16.2
CDY27540	Canola	extracellular, golgi	53.4	13.41
CDY37314	Canola	extracellular, golgi	53.4	13.41
CDX82217	Canola	golgi	53.4	13.19
CDY32405	Canola	golgi	53.4	13.13
Os04t0487100-01	Rice	mitochondrion	53.4	13.1
EES11025	Sorghum	golgi	51.46	12.74
Solyc02g093910.2.1	Tomato	extracellular, golgi	51.46	12.71
PGSC0003DMT400052239	Potato	extracellular, golgi	51.46	12.65
TraesCS2B01G364200.1	Wheat	golgi	50.49	12.53
TraesCS2D01G344500.1	Wheat	golgi	50.49	12.53
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	51.46	12.53
TraesCS2A01G345800.1	Wheat	golgi	50.49	12.5
HORVU2Hr1G084190.4	Barley	golgi	50.49	12.47
KRH07016	Soybean	endoplasmic reticulum, golgi	52.43	12.44
KRG94441	Soybean	plastid	51.46	11.8
Zm00001d003246_P001	Maize	golgi	53.4	11.48
CDY13125	Canola	cytosol	31.07	8.6
GSMUA_Achr6P28410_001	Banana	nucleus	50.49	6.58

Protein Annotations

EnsemblPlants:CDY21813	EnsemblPlantsGene:GSBRNA2T00016368001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	ProteinID:CDY21813	ProteinID:CDY21813.1	SUPFAM:SSF117281
UniParc:UPI0004EF07C0	UniProt:A0A078GAS3	MapMan:35.1	:	:	:

Description

BnaA06g20820DBnaA06g20820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAS3]

Coordinates

chrLK032124:+:542659..543228

Molecular Weight (calculated)

11981.5 Da

IEP (calculated)

9.900

GRAVY (calculated)

-0.446

Length

103 amino acids

Sequence
(BLAST)

001: MDGMCMWFQS STKTWLQFPS LPAPRYAPAT PIWRGRLHVV QGSKENRNAV AYDHWSIAVK DGKALDEWRK EVPIPRGGPQ RFLYLLQSHL LCFEPYALLQ
101: SHR

Best Arabidopsis Sequence Match ( AT3G27220.1 )
(BLAST)

001: MANKPDHHHH HHQSSRRLML VLYFTSVLGI GFIAAFLCLS SSIPSVSAVF SIWVPVNRPE IQIPIIDSKI VQKRSKQSND TKDHVRFLSA IFADIPAPEL
101: KWEEMESAPV PRLDGYSVQI NNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDRFHTPKEM ANSHLGIVTD GRYVYVVSGQ LGPQCRGPTS RSFVLDSFTK
201: TWLEFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAFD HWSIAVKDGK ALDEWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR
301: RREIFNGEVY MMDEEMKWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG FWNGYLYFTS
401: GQRDRGPDNP QPGKVIGEMW RTKLKF

Arabidopsis Description

Kelch repeat-containing protein At3g27220 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK31]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.