Factsheet for GSMUA_Achr6P28410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068730	Potato	cytosol	6.33	81.97
PGSC0003DMT400023756	Potato	cytosol	27.59	81.04
TraesCS2D01G344500.1	Wheat	golgi	42.28	80.48
Os04t0487100-01	Rice	mitochondrion	42.53	80.0
HORVU2Hr1G084190.4	Barley	golgi	42.15	79.86
TraesCS2A01G345800.1	Wheat	golgi	42.03	79.81
TraesCS2B01G364200.1	Wheat	golgi	41.9	79.76
EES11025	Sorghum	golgi	41.39	78.61
VIT_09s0054g00620.t01	Wine grape	golgi	39.37	73.0
KRH44609	Soybean	nucleus	37.72	72.68
CDY37314	Canola	extracellular, golgi	37.72	72.68
CDY27540	Canola	extracellular, golgi	37.59	72.44
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	38.86	71.73
Bra023903.1-P	Field mustard	extracellular, golgi	37.22	71.71
GSMUA_Achr11P...	Banana	golgi	38.35	71.29
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	37.85	70.69
Solyc03g123910.2.1	Tomato	extracellular	36.33	70.17
AT1G51540.1	Thale cress	endoplasmic reticulum, golgi, vacuole	36.84	70.12
CDX82217	Canola	golgi	36.96	70.02
Bra001812.1-P	Field mustard	golgi	36.96	70.02
CDY32405	Canola	golgi	36.71	69.21
Zm00001d003246_P001	Maize	golgi	40.0	65.97
Solyc02g093910.2.1	Tomato	extracellular, golgi	33.04	62.59
PGSC0003DMT400052239	Potato	extracellular, golgi	33.04	62.29
CDY13692	Canola	endoplasmic reticulum, golgi	32.91	61.32
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	32.28	60.14
CDX83669	Canola	endoplasmic reticulum, golgi	32.28	59.86
KRH07016	Soybean	endoplasmic reticulum, golgi	32.66	59.45
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	32.03	59.39
KRG94441	Soybean	plastid	33.16	58.35
CDY21813	Canola	mitochondrion	6.58	50.49
CDY13125	Canola	cytosol	22.28	47.31
Bra027529.1-P	Field mustard	cytosol	15.57	38.08

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr6G28410_001	EnsemblPlants:GSMUA_Achr6P28410_001	EnsemblPlants:GSMUA_Achr6T28410_001
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0TAY6	PFAM:PF01344	PFAM:PF03763
PFAM:PF13418	PANTHER:PTHR24413	PANTHER:PTHR24413:SF224	InterPro:Remorin_C	SUPFAM:SSF117281	TMHMM:TMhelix
UniParc:UPI000294E5A1	:	:	:	:	:

Description

Kelch repeat-containing protein At3g27220 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28410_001]

Coordinates

chr6:+:28770464..28786342

Molecular Weight (calculated)

87986.4 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.540

Length

790 amino acids

Sequence
(BLAST)

001: MRPVESKGTC TFDSAQEDNP GSNACNGDVG HKARHYRKAL SSRSKPAPSK WDDAQKWLVG LSGRGAHQHA VSKPRNSNAD DRRLLASLSQ RGRDSCSSAD
101: GVLEGGVVLA ITACDEGETK KMDYNEAMWR TNKPVQDSSM VVRSVCLRDA GTEMTPIASK EPSRTGTPLG ASTPVLKSPV CSRSSTPVRC RQGAQQNDSY
201: KEGMRKESGT DGARSYETSG SARDRNPSSL ESRATAWDEA ERAKYLASNI SIYLFVLSQV FALCIFRYKR EEVKIQAWEN HEKRKAELEM RRMEVKAERI
301: KSRAQEKYAN KSAAAGRIAE EKRASAAAKL NDRAARTSDR TDYIRRTGHL PSSFFSFKAA PVGIGMARSN ASGKYFLVLA CIALLGVALV ADFLWASSNS
401: AYSSPVWSTR FDLSLERSAT VDDPKAKTVS VWFRSRSFKD KGAQTLISKE LNATFADLPA PQLQWEEMAE APVPRLDGAA IQIKNLLYVF AGYGTINYVH
501: SHVDIYNFTD NTWGGRFDMP QEMAHSHLGM ATDGRYIYVV TGQYGPQCRG PTARNFVLDT EKKEWHDLPP LPVPRYAPAT QLWRGRLHVM GGSKEDRHEP
601: GLEHWSLAVK DGKALGKEWR SEIPIPRGGP HRACVVANDQ LIVIGGQEGD FMAKPGSPIF KCVRRSEVVY SDVYMLDDEM KWKQLPPMPK PDSHIEFAWV
701: NVNNSIIIAG GTTEKHPITK KMVLVGEIFR FNLDTLEWSV VGRMPFRIKT TLVGYWNGWL YFTSGQRDKG PNDPAPKKVV GSMWRTKLHL

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.