CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 2
mitochondrion 1
endoplasmic reticulum 3
golgi 4
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94441	Soybean	plastid	90.55	87.53
Solyc02g093910.2.1	Tomato	extracellular, golgi	66.36	69.06
PGSC0003DMT400052239	Potato	extracellular, golgi	66.13	68.5
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	65.9	67.61
TraesCS2D01G344500.1	Wheat	golgi	61.29	64.1
TraesCS2A01G345800.1	Wheat	golgi	61.06	63.7
KRH44609	Soybean	nucleus	60.14	63.66
TraesCS2B01G364200.1	Wheat	golgi	60.37	63.13
HORVU2Hr1G084190.4	Barley	golgi	60.37	62.83
Os04t0487100-01	Rice	mitochondrion	60.6	62.62
EES11025	Sorghum	golgi	59.22	61.78
CDY13692	Canola	endoplasmic reticulum, golgi	59.45	60.85
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	58.99	60.09
CDX83669	Canola	endoplasmic reticulum, golgi	58.99	60.09
Bra025259.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion	58.29	59.67
CDY21813	Canola	mitochondrion	12.44	52.43
Zm00001d003246_P001	Maize	golgi	56.68	51.36
GSMUA_Achr6P28410_001	Banana	nucleus	59.45	32.66

Protein Annotations

EntrezGene:100779467	Gene3D:2.120.10.80	MapMan:35.1	EMBL:ACUP02009914	EnsemblPlantsGene:GLYMA_16G062000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787
GO:GO:0043161	UniProt:I1MLM5	InterPro:IPR015915	EnsemblPlants:KRH07016	ProteinID:KRH07016	ProteinID:KRH07016.1
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF13418	PFAM:PF13964	PANTHER:PTHR24413	PANTHER:PTHR24413:SF111
SMART:SM00612	SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI0001BA8574	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:-:6050870..6054862

Molecular Weight (calculated)

49037.1 Da

IEP (calculated)

9.829

GRAVY (calculated)

-0.317

Length

434 amino acids

Sequence
(BLAST)

001: MASPTTRFLH HHSHYSSASK ILIFFCLSAF LALALIANLF RASLSTHYLA IATNWVDTNA PLLIPNLTAI PHNNNNNKGK DGKIAKRRGP ERFLSATFAD
101: LPAPEWHWKQ MPSAPVPRLD GYSIQIKNMF YVFAGYANLD HVHSHVDVFD FSSNKWVDQI KMPKEMAHSH LGIASDGRYI YIISGQYGIQ CSGPTTASFS
201: LDTATKKWKP LPPLPAPRYA PATQLWKGRL HVMGGSKENR HTPGIDHWSL AVKDGEALEQ QWRDEVPIPR GGPHRACIAV NDRLFVIGGQ EGDFMAKPGS
301: PIFKCSRRHE VVYGDVYMLD EEMKWKILPA MPKPDSHIEC AWVIVNNSII ITGGTTEKHP VTKRMMLVGE VFQFRLDTMK WSVIGKLPYR IKTTLTGFWD
401: GWLYFTSGQR DRGPDNPQPK QVVGEMWRTK LHLS

Best Arabidopsis Sequence Match ( AT1G51540.1 )
(BLAST)

001: MVRKQKYGKV VLVSCIALLA TGLIADFLWA TSHRFSSAAI SAGLSLPSSL TTVIVPGQEK DTKKKKDSVK ERKLSNTFQD LPAPELKWEK MAASPVPRLD
101: GAAIQIRDLL YVFAGYGTID LVHSHVDIYN FTDNSWGGRF NMPKDMAHSH LGMVTDGRYI YIVTGQFGPQ CRGPTAKTFV LDTDTNTWKD FVPLPVPRYA
201: PATQLWRGRL HVMGGSKENR FTPGLEHWSI AVKDGKSLEN EWRSEIPIPR GGPHRACVVV DDRLFVIGGQ EGDFMAKPGS PIFKCSRRME VVFSDVYMLD
301: EEMKWKVMPP MPKPDSHIEF AWKVVNNSIV IVGGTTEKHP ETKKMVLVGE IFQFNLNTLK WYVIGKLPYR VKTTLAGYWD GQLYFTSGQR DKGPDDPAPR
401: KVMAEMWRTK LILNP

Arabidopsis Description

At1g51540 [Source:UniProtKB/TrEMBL;Acc:Q84VX7]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.