Factsheet for Bra025259.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13692	Canola	endoplasmic reticulum, golgi	95.52	95.52
CDX83669	Canola	endoplasmic reticulum, golgi	88.92	88.5
AT3G27220.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	85.14	84.74
CDY21813	Canola	mitochondrion	16.51	67.96
VIT_14s0171g00320.t01	Wine grape	extracellular, golgi	62.97	63.12
Bra001812.1-P	Field mustard	golgi	61.08	62.11
Bra023903.1-P	Field mustard	extracellular, golgi	59.67	61.71
TraesCS2A01G345800.1	Wheat	golgi	59.67	60.82
TraesCS2B01G364200.1	Wheat	golgi	59.43	60.72
TraesCS2D01G344500.1	Wheat	golgi	59.43	60.72
Os04t0487100-01	Rice	mitochondrion	60.14	60.71
HORVU2Hr1G084190.4	Barley	golgi	58.96	59.95
EES11025	Sorghum	golgi	58.73	59.86
Solyc02g093910.2.1	Tomato	extracellular, golgi	58.49	59.47
PGSC0003DMT400052239	Potato	extracellular, golgi	58.73	59.43
KRH07016	Soybean	endoplasmic reticulum, golgi	59.67	58.29
KRG94441	Soybean	plastid	59.67	56.35
Zm00001d003246_P001	Maize	golgi	57.78	51.15
Bra027529.1-P	Field mustard	cytosol	26.65	34.98
GSMUA_Achr6P28410_001	Banana	nucleus	60.14	32.28

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra025259	EnsemblPlants:Bra025259.1	EnsemblPlants:Bra025259.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009061	GO:GO:0009987	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4E903	PFAM:PF13418
PANTHER:PTHR24413	PANTHER:PTHR24413:SF137	SUPFAM:SSF117281	TMHMM:TMhelix	UniParc:UPI000253F5B3	SEG:seg

Description

AT3G27220 (E=6e-217) | kelch repeat-containing protein

Coordinates

chrA06:+:22533609..22535510

Molecular Weight (calculated)

48086.5 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.400

Length

424 amino acids

Sequence
(BLAST)

001: MASKPDHHHH RTSRRLMLVL YFTCVLVAAF LCLSSTKPSL SSVSSIWVPE NPPEIQAPSI DSRIVQKRSK QSNETKDDHV NNIRLLSATS ADLPAPELQW
101: EQMTSAPVPR LDGYSVQIQN LLYVFSGYGS LDYVHSHVDV FNFTDDKWCD RFDTPKEMAN SHLGIVTDGR YVYVVSGQFG PQCRGPTSRS FVLDSSTKTW
201: LDFPSLPAPR YAPATQIWRG RLHVMGGSKE NRNAVASDHW SIAVKDGKAL DKWREEVPIP RGGPHRACVV ANDKLLVIGG QEGDFMAKPN SPIFKCSRRR
301: EFFNGEVYMM DEEMKWKMLP PMPKNNSHIE SAWIIVNNSI VIVGGTTDWH PVTKRLVLVG EIFRFQLDNL TWSVIGRLPY RVKTAMAGYW NGYLYFTSGQ
401: RDRGPDNPQP GKVIGEMWRT KLKF

Best Arabidopsis Sequence Match ( AT3G27220.1 )
(BLAST)

001: MANKPDHHHH HHQSSRRLML VLYFTSVLGI GFIAAFLCLS SSIPSVSAVF SIWVPVNRPE IQIPIIDSKI VQKRSKQSND TKDHVRFLSA IFADIPAPEL
101: KWEEMESAPV PRLDGYSVQI NNLLYVFSGY GSLDYVHSHV DVFNFTDNKW CDRFHTPKEM ANSHLGIVTD GRYVYVVSGQ LGPQCRGPTS RSFVLDSFTK
201: TWLEFPSLPA PRYAPATQIW RGRLHVMGGS KENRNAVAFD HWSIAVKDGK ALDEWREEVP IPRGGPHRAC VVANDKLLVI GGQEGDFMAK PNSPIFKCSR
301: RREIFNGEVY MMDEEMKWKM LPPMPKNNSH IESAWIIVNN SIVIVGGTTD WHPVTKRLVL VGEIFRFQLD TLTWSVIGRL PYRVKTAMAG FWNGYLYFTS
401: GQRDRGPDNP QPGKVIGEMW RTKLKF

Arabidopsis Description

Kelch repeat-containing protein At3g27220 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK31]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.