Factsheet for VIT_04s0008g05120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61796	Soybean	plastid	80.54	80.23
KRH52472	Soybean	plastid	80.16	79.84
PGSC0003DMT400083903	Potato	plastid	77.82	78.43
Solyc08g067160.2.1	Tomato	plastid	77.82	78.43
VIT_11s0016g04850.t01	Wine grape	plastid	73.93	74.22
VIT_09s0002g06010.t01	Wine grape	extracellular	77.43	68.15
VIT_00s0612g00010.t01	Wine grape	cytosol	17.12	25.43
VIT_00s0515g00010.t01	Wine grape	cytosol	28.02	15.19

Protein Annotations

EntrezGene:100259338	wikigene:100259338	Gene3D:3.40.50.1820	MapMan:35.1	InterPro:AB_hydrolase	ProteinID:CBI21011
ProteinID:CBI21011.3	UniProt:D7SUR2	EMBL:FN595231	GO:GO:0002084	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008474	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0052689	InterPro:IPR029058	EntrezGene:LOC100259338	wikigene:LOC100259338	PFAM:PF02230	InterPro:PLipase/COase/thioEstase
PANTHER:PTHR10655	PANTHER:PTHR10655:SF34	MEROPS:S09.A56	SUPFAM:SSF53474	TIGR:TC62610	UniParc:UPI0001983085
ArrayExpress:VIT_04s0008g05120	EnsemblPlantsGene:VIT_04s0008g05120	EnsemblPlants:VIT_04s0008g05120.t01	unigene:Vvi.25688	unigene:Vvi.5995	RefSeq:XP_002285009
RefSeq:XP_002285009.1	RefSeq:XP_003631758	RefSeq:XP_003631758.1	RefSeq:XP_010648640.1	RefSeq:XP_010648641.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:4589305..4595021

Molecular Weight (calculated)

27667.9 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.120

Length

257 amino acids

Sequence
(BLAST)

001: MSFNSSTMGS GSRTTRRTFE FGRTHVVRPK GKHQATIVWL HGLGDKGSSW SQILETLPLP NIKWICPTAP TRPVALLGGF PCTAWFDVGE ISEDAPDDLE
101: GLDASAAHVA NLLSTEPANI KLGVGGFSMG AAVAVYSATC RVLGQYGNGN PYQVTLSAIV GLSGWLPCSR TLMNQMERSH EAARRAATLP ILLCHGIGDD
201: VVAYKHGEKS AQTLSAAGFR NLTFRTYNGL GHYTIPEETD EVCNWLTARL MLDGSRS

Best Arabidopsis Sequence Match ( AT5G20060.1 )
(BLAST)

001: MSISGAAVGS GRNLRRAVEF GKTHVVRPKG KHQATIVWLH GLGDNGSSWS QLLETLPLPN IKWICPTAPS QPISLFGGFP STAWFDVVDI NEDGPDDMEG
101: LDVAAAHVAN LLSNEPADIK LGVGGFSMGA ATSLYSATCF ALGKYGNGNP YPINLSAIIG LSGWLPCAKT LAGKLEEEQI KNRAASLPIV VCHGKADDVV
201: PFKFGEKSSQ ALLSNGFKKV TFKPYSALGH HTIPQELDEL CAWLTSTLSL EG

Arabidopsis Description

Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L9X1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.