Factsheet for VIT_06s0004g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55550.1	VIT_19s0015g00430.t01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045963	Potato	cytosol	22.83	60.68
Os01t0260100-01	Rice	cytosol	32.15	51.02
VIT_18s0041g01920.t01	Wine grape	cytosol	17.68	40.15
Zm00001d033009_P001	Maize	cytosol	8.68	35.53
Solyc01g049840.1.1	Tomato	cytosol	23.15	32.73
GSMUA_Achr3P23870_001	Banana	cytosol	32.15	27.55
Bra038000.1-P	Field mustard	cytosol	52.41	21.82
CDY54364	Canola	cytosol	53.38	20.96
CDY50030	Canola	cytosol	52.73	20.68
AT1G55550.1	Thale cress	cytosol	54.66	19.79
CDY10550	Canola	cytosol	52.73	19.59
OQU86633	Sorghum	cytosol	51.13	19.3
TraesCS3A01G177700.1	Wheat	cytosol	51.45	19.25
Bra030851.1-P	Field mustard	nucleus	51.45	19.21
CDY56014	Canola	nucleus	51.45	19.14
TraesCS3B01G207300.1	Wheat	cytosol	50.8	19.01
TraesCS3D01G183100.2	Wheat	cytosol	50.48	18.89
VIT_14s0030g01360.t01	Wine grape	cytosol	36.66	17.81
HORVU3Hr1G036020.11	Barley	cytosol	21.86	12.59
VIT_00s0313g00080.t01	Wine grape	cytosol	23.15	7.15
PGSC0003DMT400080666	Potato	cytosol	1.29	2.3
VIT_00s0407g00080.t01	Wine grape	cytosol	1.61	1.68
GSMUA_Achr3P23860_001	Banana	cytosol	0.96	1.17
Solyc01g049830.2.1	Tomato	mitochondrion	0.0	0.0
PGSC0003DMT400046268	Potato	mitochondrion	0.0	0.0
VIT_00s2417g00020.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100257047	wikigene:100257047	Gene3D:3.40.850.10	MapMan:35.1	EMBL:AM461173	ProteinID:CAN72398
ProteinID:CAN72398.1	ProteinID:CCB43826	ProteinID:CCB43826.1	ncoils:Coil	UniProt:F6GUR9	EMBL:FN594951
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003774	GO:GO:0003777	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005871	GO:GO:0006139	GO:GO:0006259	GO:GO:0007018	GO:GO:0008017
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016787	GO:GO:0016887
InterPro:IPR001752	InterPro:IPR036961	InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	EntrezGene:LOC100257047
wikigene:LOC100257047	InterPro:P-loop_NTPase	PFAM:PF00225	PRINTS:PR00380	PFscan:PS50067	PANTHER:PTHR24115
PANTHER:PTHR24115:SF391	SMART:SM00129	SUPFAM:SSF52540	UniParc:UPI0002109798	ArrayExpress:VIT_06s0004g00050	EnsemblPlantsGene:VIT_06s0004g00050
EnsemblPlants:VIT_06s0004g00050.t01	RefSeq:XP_002283784	RefSeq:XP_002283784.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:136032..138536

Molecular Weight (calculated)

34378.9 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.265

Length

311 amino acids

Sequence
(BLAST)

001: MNMDTRKPVG NLAESIRSLL GLKANLTSSW ADSVSDIIKS LPSEEPRTDR IKPAKSETTN SFDDKEVNSG TIILKLKDEL AALTAYINQL NIQRRQVLNE
101: FLDLKGNIRV FCRIRPITVG ENSSHLSTVV TLDSSNALLK LAENKSKRYS FDKVFHPGSS QDDVFLEVEP VIKTALDGYN ACIFAYGQTG TGKTYTMEGT
201: PDCPGVVPRA MEVLFKQAVD SNHAFLFSFS MLEIYLGNLK DLLVPQSTKV TDPLPPSLSV HTDPKGGIEI DNLVSIQVSD FNQALSLYRL GRRFRSTAST
301: NSNIASSRSH W

Best Arabidopsis Sequence Match ( AT1G55550.1 )
(BLAST)

001: MERTRSKPVR NLPETIHSLL GLKSHMTSDW VKSVCNIAKN TSSTSKKEED DFVSVDLQSI RDQLSALTVQ VNDQNKLRRQ ILNEFLDLKG NIRVFCRVKP
101: LGATEKLRPP VASDTRNVII KLSETKRKTY NFDRVFQPDS SQDDVFLEIE PVIKSVIDGY NACIFAYGQT GTGKTYTMEG LPNSPGIVPR AIKGLFKQVE
201: ESNHMFTIHF SMLEIYMGNL KDLLLSEATK PISPIPPSLS IHTDPNGEID IENLVKLKVD DFNEILRLYK VGCRSRATAS TNSNSVSSRS HCMIRVSVTS
301: LGAPERRRET NKIWLVDLGG SERVLKTRAT GRRFDEGKAI NLSLSALGDV INSLQRKNSH IPYRNSKLTQ VLKDSLGQDS KTLMLVHISP KEDDLCETIC
401: SLNFATRAKN IHLGQDESTE EQAKKEAVMM NLQKMMEKIE QEREMSLRKM RNLNETLEKL TGKPHVIEEE EKDVVREVIH VTPKKPRNKS RRASDVFPSF
501: MRPTASSNRR LSGADFSVTP NSSSFKSRRN SMISVRAESA CLPVKKKKNR FDSACDSSDR SVSKSTSIMR QNTADDATVY SQDISECDIK LVVSEHKPKP
601: LQMGPGSATK SRSNISNFEK DVMQKIGGTE FSRINSWLRS QSENRSYVLD KTQLPATHFL ENLNRSLEKS PTQSFTTEKI TGNELEGIEE TKTNETVVNP
701: TLMLKKLFEL QCLCSAEEED QILSRFPIPG YEDDDESRYP PILENDGFSQ HIDNEWFGVN NYSADWERDS PATIPLLECE PDLKQLLPEL GLDRSLKPRG
801: LAVAEGAAPP LLRAQETLGE RGKGPTFMQK LQALCFRILL GLGFMDVGFG NDFFNGLTK

Arabidopsis Description

KIN14TKinesin-like protein KIN-14T [Source:UniProtKB/Swiss-Prot;Acc:F4I1T9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.