Factsheet for VIT_10s0116g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
vacuole 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g01880.t01	Wine grape	plasma membrane	74.8	74.07
VIT_12s0059g02180.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.43	71.01
VIT_10s0116g01870.t01	Wine grape	plastid	71.83	70.98
Solyc02g032660.2.1	Tomato	cytosol, peroxisome, vacuole	70.24	70.24
VIT_12s0059g02220.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	70.63	70.22
PGSC0003DMT400032971	Potato	cytosol, peroxisome, plasma membrane	69.64	70.2
PGSC0003DMT400042438	Potato	cytosol, peroxisome, plasma membrane	69.25	68.57
VIT_12s0059g02160.t01	Wine grape	plasma membrane	69.64	68.16
Solyc02g080490.2.1	Tomato	cytosol, peroxisome, plasma membrane	67.26	67.26
VIT_18s0001g11760.t01	Wine grape	plasma membrane	49.01	51.57
VIT_12s0059g02230.t01	Wine grape	cytosol, nucleus, plasma membrane	67.46	49.42
VIT_00s0225g00060.t01	Wine grape	plasma membrane	49.4	48.63
VIT_00s0225g00070.t01	Wine grape	plasma membrane	47.62	47.9
VIT_00s0225g00050.t01	Wine grape	cytosol, peroxisome, plasma membrane	48.21	47.74
VIT_12s0028g01150.t01	Wine grape	plasma membrane	47.62	47.62
VIT_12s0028g01160.t01	Wine grape	peroxisome, plasma membrane, vacuole	47.02	46.84
VIT_00s0225g00080.t01	Wine grape	cytosol, peroxisome, plasma membrane	47.82	46.71
VIT_16s0050g00900.t01	Wine grape	plasma membrane	45.04	46.42
VIT_16s0050g00910.t01	Wine grape	plasma membrane	45.04	46.42
VIT_08s0056g00890.t01	Wine grape	plasma membrane	39.68	46.3
VIT_16s0050g00930.t01	Wine grape	plasma membrane	44.84	45.84
VIT_18s0001g06790.t01	Wine grape	plasma membrane	44.25	45.51
VIT_08s0056g01000.t01	Wine grape	plasma membrane, vacuole	36.31	43.99
VIT_08s0056g00780.t01	Wine grape	golgi, peroxisome, plasma membrane	43.06	43.84
VIT_08s0056g01070.t01	Wine grape	plasma membrane	41.47	43.09
VIT_15s0046g01800.t01	Wine grape	plasma membrane	41.27	43.06
VIT_18s0001g06820.t01	Wine grape	plasma membrane	41.07	42.77
VIT_08s0056g01120.t01	Wine grape	plasma membrane	38.89	40.41
VIT_08s0056g00870.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.5	38.81
VIT_08s0056g01040.t01	Wine grape	golgi, peroxisome, plasma membrane	28.97	37.82
VIT_08s0056g01080.t01	Wine grape	plasma membrane	37.3	36.65

Protein Annotations

EntrezGene:100252079	wikigene:100252079	MapMan:24.2.4.1.1	EMBL:AM426583	ProteinID:CAN60226	ProteinID:CAN60226.1
ProteinID:CCB48225	ProteinID:CCB48225.1	UniProt:F6H7N3	EMBL:FN595248	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006855	GO:GO:0008150	GO:GO:0015238	GO:GO:0015297
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100252079	wikigene:LOC100252079	InterPro:MATE_fam
PFAM:PF01554	PANTHER:PTHR11206	PANTHER:PTHR11206:SF188	TIGRFAMs:TIGR00797	TMHMM:TMhelix	UniParc:UPI0002109019
ArrayExpress:VIT_10s0116g01860	EnsemblPlantsGene:VIT_10s0116g01860	EnsemblPlants:VIT_10s0116g01860.t01	unigene:Vvi.2895	RefSeq:XP_002274027	RefSeq:XP_002274027.2
SEG:seg	:	:	:	:	:

Description

Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:F6H7N3]

Coordinates

chr10:+:1119895..1125479

Molecular Weight (calculated)

54451.8 Da

IEP (calculated)

4.852

GRAVY (calculated)

0.756

Length

504 amino acids

Sequence
(BLAST)

001: MESTQDELAQ PILLPKQYSS SPEPVSSELE EVLSNTDLSY SRRIGSATLI ELNILFRLAG PAVVVYLLNN VTSMSTQIFC GHLGNLELAA SALGNNGIQV
101: FSYGLMLGMG SAVETLCGQA YGAHKFDMLG VYLQRSTILL TATGIPLTII YIFSKDLLLL LGESTEIASA AAIFVYGLIP QIFAYATNFP IQKFLQAQSI
201: VFPSAYISAA TLCVHLLLSW LAIYKLGLGL LGASLVLSLS WWIIVVAQFV YILVSDRCKY TWTGFSLQAF SGLWEFLKLS TASAVMLCLE TWYYQILVLI
301: AGLLENAEIA LDSLSICMTI SGWVFMIAVG FNAAASVRVS NEIGAGHPKS ASFAVFVVTS TSFIIAVFLA ILVMLLRHVV SYVFTSGTTV ADAVSDLAPF
401: LAVSIVLNGI QPVLSGVAVG CGWQAFVAYV NVGCYYVVGI PLGALLGFKF DLGVKGIWSG MIGGTVMQTL ILLWVTYRTD WNKEVEKAKS RLETWDTNNS
501: ASLD

Best Arabidopsis Sequence Match ( AT3G21690.1 )
(BLAST)

001: MDSSPNDGVH QPLLHPQPSP SPPESTNGEL ETVLSDVETP LFLRLRKATI IESKLLFNLA APAVIVYMIN YLMSMSTQIF SGHLGNLELA AASLGNTGIQ
101: VFAYGLMLGM GSAVETLCGQ AYGGRKYEML GVYLQRSTVL LTLTGLLLTL IYVFSEPILL FLGESPAIAS AASLFVYGLI PQIFAYAANF PIQKFLQSQS
201: IVAPSAYIST ATLFVHLLLS WLAVYKLGMG LLGASLVLSL SWWIIVVAQF VYIVTSERCR ETWRGFSVQA FSGLWSFFKL SAASAVMLCL ETWYFQILVL
301: LAGLLENPEL ALDSLSICMT ISGWVFMISV GFNAAISVRV SNELGAGNPK SAAFSVIIVN IYSLITCVIL AIVILACRDV LSYAFTEGKE VSDAVSDLCP
401: LLAVTLVLNG IQPVLSGVAV GCGWQTFVAK VNVGCYYIIG IPLGALFGFY FNFGAKGIWT GMIGGTVIQT FILAWVTFRT DWTKEVEEAS KRLDKWSNKK
501: QEVVPE

Arabidopsis Description

DTX40Protein DETOXIFICATION 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVD9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.