Factsheet for Zm00001d044995_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037112_P001	Maize	plastid	91.84	91.22
EER89389	Sorghum	cytosol	92.06	90.22
Os06t0202900-01	Rice	cytosol, plasma membrane	80.27	83.1
TraesCS7A01G163300.1	Wheat	cytosol	76.87	79.21
TraesCS7D01G165300.1	Wheat	cytosol	77.32	78.94
TraesCS7B01G069100.1	Wheat	cytosol	70.07	75.18
Zm00001d018262_P001	Maize	cytosol, plastid	66.44	67.05
GSMUA_Achr5P24670_001	Banana	cytosol	44.67	66.33
GSMUA_Achr10P...	Banana	cytosol	46.03	61.7
Zm00001d014243_P001	Maize	plastid	53.06	60.78
GSMUA_Achr6P04420_001	Banana	mitochondrion, plastid	57.37	57.63
GSMUA_Achr8P22630_001	Banana	mitochondrion	51.02	57.25
GSMUA_Achr7P02350_001	Banana	cytosol	51.02	54.35
Zm00001d027892_P001	Maize	plastid	54.88	54.26
Zm00001d020631_P001	Maize	plastid	55.56	53.38
Zm00001d022126_P001	Maize	mitochondrion	55.56	53.38
Zm00001d027734_P004	Maize	cytosol, plastid	46.03	52.45
Zm00001d032069_P001	Maize	cytosol, plastid	56.01	52.0
Zm00001d032902_P001	Maize	plastid	43.76	50.39
Zm00001d029468_P002	Maize	plastid	51.02	47.67
Zm00001d029258_P001	Maize	mitochondrion, plastid	46.49	47.45
Zm00001d047437_P001	Maize	plastid	46.71	46.82
Zm00001d046939_P001	Maize	cytosol	45.35	42.83
Zm00001d002481_P005	Maize	mitochondrion, plasma membrane	28.34	41.67
Zm00001d052376_P006	Maize	cytosol	41.72	41.07
Zm00001d005036_P003	Maize	cytosol	43.54	39.1
Zm00001d036656_P003	Maize	cytosol	42.86	38.49
Zm00001d049599_P001	Maize	plastid	28.12	35.84
Zm00001d014697_P002	Maize	mitochondrion	32.88	35.54
Zm00001d036459_P005	Maize	mitochondrion, plastid	31.07	34.68
Zm00001d004073_P002	Maize	plastid	17.01	26.5
Zm00001d025700_P001	Maize	plasma membrane	14.29	23.6

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	ProteinID:AQL01288.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	UniProt:K7W5B8	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000615
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF179	InterPro:Prot_kinase_dom	SUPFAM:SSF56112
InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000221F22D	EnsemblPlantsGene:Zm00001d044995	EnsemblPlants:Zm00001d044995_P001	EnsemblPlants:Zm00001d044995_T001
SEG:seg	:	:	:	:	:

Description

root-specific kinase 1

Coordinates

chr9:+:9516903..9519596

Molecular Weight (calculated)

47921.2 Da

IEP (calculated)

9.330

GRAVY (calculated)

-0.312

Length

441 amino acids

Sequence
(BLAST)

001: MGLRESLFGC FGAGGQEQGQ EPAAAGPASR RPGGVGKRTL RRLSTANLRS LSLQDLSRKL ETTKLHAFTL DELKAATKNF STTNFLGEGG FGPVYKGFVD
101: GRLRPGLQPQ HVAVKYLDSD GVQGHREWLA EVVYLGMLSH PHLVKLVGFC NQDDHRMLVY EYMPGQSLES HLFKNLLASL PWSTRLKIAV GAAKGLAFLH
201: EAETPVIYRD FKASNILLDS DYTAKLSDFG LAKEGPQGDA THVTTRVMGT HGYAAPEYIL TGHLTAKSDV YSFGVVLLEL LTGRRSVDKS RRGREQNLVD
301: WARPYLRRAD RLHRFMDPGL EMQYSARAAE KAAGVAHQCL QSVPKARPTM RHVVDALEPL LALDDDVPMG PFVFTVGGAA AEAEAAPAQA GVAGDDNADA
401: EAAGRQGKRH VMSAVHAESP LRSRYASAVK RPESPPTLSR A

Best Arabidopsis Sequence Match ( AT2G05940.1 )
(BLAST)

001: MAVKKKVSWR SLIVGCLGDP ETLMASSKKP KRKNDVIKKQ SSFQRLSILD MSNPSSNTLS EDLSISLAGS DLHVFTLAEL KVITQSFSST NFLGEGGFGP
101: VHKGFIDDKL RPGLKAQPVA VKLLDLEGLQ GHREWLTEVM FLGQLKHKNL VKLIGYCCEE EHRTLVYEFM PRGSLENQLF RRYSASLPWS TRMKIAHGAA
201: TGLQFLHEAE NPVIYRDFKA SNILLDSDYT AKLSDFGLAK DGPEGDDTHV STRVMGTQGY AAPEYIMTGH LTARSDVYSF GVVLLELLTG RRSVDKKRSS
301: REQNLVDWAR PMLNDPRKLS RIMDPRLEGQ YSETGARKAA TLAYQCLSHR PKNRPCMSAV VSILNDLKDY NDIPMGTFTY TVPNTPDNKE DDGRVGNKPR
401: KSSHHHHHQQ QQSNHPRSSP SPTTKSPSPT AKSPRNSTEN HRRTLRNGVN SPLRSEAGGE RY

Arabidopsis Description

RIPKSerine/threonine-protein kinase RIPK [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.