Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47532 | Canola | plasma membrane | 79.71 | 80.15 |
| Bra014322.1-P | Field mustard | plasma membrane | 78.62 | 78.77 |
| CDY02544 | Canola | plasma membrane | 77.36 | 78.21 |
| VIT_16s0013g02130.t01 | Wine grape | plasma membrane | 63.95 | 63.49 |
| KRH37541 | Soybean | plasma membrane | 61.23 | 62.02 |
| KRH12592 | Soybean | plasma membrane | 60.87 | 61.43 |
| Solyc02g068370.2.1 | Tomato | nucleus, plasma membrane | 60.33 | 61.21 |
| GSMUA_Achr10P... | Banana | plasma membrane | 61.05 | 60.72 |
| PGSC0003DMT400024351 | Potato | plasma membrane | 59.78 | 60.22 |
| TraesCS3D01G079200.2 | Wheat | plasma membrane | 58.88 | 58.98 |
| TraesCS3B01G093800.2 | Wheat | plasma membrane | 58.88 | 58.98 |
| TraesCS3A01G078700.1 | Wheat | plasma membrane | 59.06 | 58.84 |
| Os01t0104000-01 | Rice | plasma membrane | 58.7 | 58.38 |
| Zm00001d040192_P001 | Maize | plasma membrane | 58.51 | 58.2 |
| EES00463 | Sorghum | plasma membrane | 57.25 | 56.94 |
| HORVU3Hr1G014230.1 | Barley | cytosol, mitochondrion, plasma membrane | 59.24 | 53.26 |
| AT1G52540.1 | Thale cress | cytosol | 19.2 | 30.29 |
| AT3G15890.1 | Thale cress | cytosol | 19.2 | 29.36 |
Protein Annotations
| Gene3D:1.10.510.10 | MapMan:18.4.1.27 | Gene3D:3.10.100.10 | Gene3D:3.30.200.20 | EntrezGene:841661 | ProteinID:AAG51547.1 |
| ProteinID:AEE32780.1 | EMBL:AK220938 | ArrayExpress:AT1G52310 | EnsemblPlantsGene:AT1G52310 | RefSeq:AT1G52310 | TAIR:AT1G52310 |
| RefSeq:AT1G52310-TAIR-G | EnsemblPlants:AT1G52310.1 | TAIR:AT1G52310.1 | EMBL:AY062751 | EMBL:BT008903 | InterPro:C-type_lectin-like |
| InterPro:C-type_lectin-like/link_sf | InterPro:CTDL_fold | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 |
| GO:GO:0004674 | GO:GO:0004713 | GO:GO:0004714 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016310 |
| GO:GO:0016740 | GO:GO:0018108 | GO:GO:0019538 | GO:GO:0030246 | GO:GO:0038023 | InterPro:IPR000719 |
| InterPro:IPR001304 | InterPro:IPR016186 | InterPro:Kinase-like_dom_sf | RefSeq:NP_175641.1 | PFAM:PF00059 | PFAM:PF07714 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00109 | PFscan:PS50011 | PFscan:PS50041 | PANTHER:PTHR27006 | PANTHER:PTHR27006:SF5 | InterPro:Prot_kinase_dom |
| UniProt:Q9C823 | SMART:SM00034 | SMART:SM00219 | SMART:SM00220 | SUPFAM:SSF56112 | SUPFAM:SSF56436 |
| InterPro:Ser-Thr/Tyr_kinase_cat_dom | SignalP:SignalP-noTM | TMHMM:TMhelix | InterPro:Tyr_kinase_AS | InterPro:Tyr_kinase_cat_dom | UniParc:UPI0000048383 |
| SEG:seg | : | : | : | : | : |
Description
C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Source:UniProtKB/Swiss-Prot;Acc:Q9C823]
Coordinates
chr1:+:19478066..19481154
Molecular Weight (calculated)
61824.6 Da
IEP (calculated)
9.713
GRAVY (calculated)
-0.168
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MELKWVSCRK QSLFLISCLA LLCLASLDTI SCESTQNATD FKKRSQTVSC PPDWIIGPNQ TKCYAYFKNS TSWEKSEMFC RTYGGHLASL ASSKELSFVQ
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.