Factsheet for VIT_16s0013g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 2
plasma membrane 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068370.2.1	Tomato	nucleus, plasma membrane	68.7	70.22
KRH37541	Soybean	plasma membrane	68.53	69.91
KRH12592	Soybean	plasma membrane	68.53	69.65
GSMUA_Achr10P...	Banana	plasma membrane	69.24	69.37
PGSC0003DMT400024351	Potato	plasma membrane	67.99	68.98
TraesCS3B01G093800.2	Wheat	plasma membrane	65.83	66.42
TraesCS3D01G079200.2	Wheat	plasma membrane	65.65	66.24
Os01t0104000-01	Rice	plasma membrane	65.65	65.77
TraesCS3A01G078700.1	Wheat	plasma membrane	64.93	65.16
AT1G52310.1	Thale cress	plasma membrane	63.49	63.95
Zm00001d040192_P001	Maize	plasma membrane	63.67	63.78
CDY47532	Canola	plasma membrane	62.41	63.21
EES00463	Sorghum	plasma membrane	62.59	62.7
CDY02544	Canola	plasma membrane	61.51	62.64
Bra014322.1-P	Field mustard	plasma membrane	61.69	62.25
HORVU3Hr1G014230.1	Barley	cytosol, mitochondrion, plasma membrane	66.19	59.93
VIT_09s0002g07060.t01	Wine grape	cytosol	19.24	28.53
VIT_11s0052g01820.t01	Wine grape	cytosol	18.17	26.37
VIT_16s0022g02280.t01	Wine grape	cytosol	16.01	25.95

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100245331	wikigene:100245331	MapMan:18.4.1.27	Gene3D:3.10.100.10	Gene3D:3.30.200.20
InterPro:C-type_lectin-like	InterPro:C-type_lectin-like/link_sf	ProteinID:CCB61267	ProteinID:CCB61267.1	InterPro:CTDL_fold	UniProt:F6I2V0
EMBL:FN596738	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675
GO:GO:0004713	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0018108	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:IPR001304	InterPro:IPR016186	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100245331	wikigene:LOC100245331	PFAM:PF00059
PFAM:PF07714	ScanProsite:PS00109	PFscan:PS50011	PFscan:PS50041	PANTHER:PTHR27001	PANTHER:PTHR27001:SF85
InterPro:Prot_kinase_dom	SMART:SM00034	SMART:SM00219	SUPFAM:SSF56112	SUPFAM:SSF56436	InterPro:Ser-Thr/Tyr_kinase_cat_dom
TMHMM:TMhelix	InterPro:Tyr_kinase_AS	InterPro:Tyr_kinase_cat_dom	UniParc:UPI000210A82E	ArrayExpress:VIT_16s0013g02130	EnsemblPlantsGene:VIT_16s0013g02130
EnsemblPlants:VIT_16s0013g02130.t01	unigene:Vvi.5725	RefSeq:XP_002263812	RefSeq:XP_002263812.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:10082830..10090315

Molecular Weight (calculated)

62362.3 Da

IEP (calculated)

9.048

GRAVY (calculated)

-0.124

Length

556 amino acids

Sequence
(BLAST)

001: MRPVLGFVVY EIVFMEGKLV RLQFPLLVIS CLVFQLRASD AILHESRRSL ESRKEALCPP DWITGPDKNK CFRYIGNPQS WDVSEAYCKS LGGHLAALTS
101: FQELSSVQNL CGESNNGCWV GGRGVNSTFG AGWKWSDNTS HWNESIFPNC TNSSCHIKNS VDSCTLVTNG STFLIGERCN MSHASICMID IENKCYHMHC
201: HKEYLIILAV VSGLILSTTL AVVIWLLAYR RSKRRRRSRK LSNPAASALV PPSWKVFTNE ELRSITKNFS EGNRLLGDAK TGGTYSGLLP DGSRVAVKRL
301: KRSTFQRKKE FYSEIGRVAR LHHPNLVAVK GCCYDHGDRY IVYEFIINGP LDRWLHHIPR GGRSLDWAMR MKIATTLAQG IAFLHDKVKP HVVHRDIRAS
401: NVLLDEEFGA HLMGVGLSKF VSWEVMHQGT VMAGGTYGYL APEFVYRNEL TTKSDVYSFG VLLLEIVSGR RPAQAVDSVG WQSIFEWATP LVQSHRYPEL
501: LDPLISSSSA DIPEAGVIQK VVDLVYACTQ HVPSMRPRMS HVVHQLQQLA QPPIAK

Best Arabidopsis Sequence Match ( AT1G52310.1 )
(BLAST)

001: MELKWVSCRK QSLFLISCLA LLCLASLDTI SCESTQNATD FKKRSQTVSC PPDWIIGPNQ TKCYAYFKNS TSWEKSEMFC RTYGGHLASL ASSKELSFVQ
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK

Arabidopsis Description

C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Source:UniProtKB/Swiss-Prot;Acc:Q9C823]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.