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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • nucleus 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d040192_P001 Maize plasma membrane 90.27 90.27
TraesCS3D01G079200.2 Wheat plasma membrane 79.64 80.22
TraesCS3B01G093800.2 Wheat plasma membrane 78.92 79.49
TraesCS3A01G078700.1 Wheat plasma membrane 78.2 78.34
Os01t0104000-01 Rice plasma membrane 77.66 77.66
HORVU3Hr1G014230.1 Barley cytosol, mitochondrion, plasma membrane 78.2 70.68
GSMUA_Achr10P... Banana plasma membrane 69.73 69.73
VIT_16s0013g02130.t01 Wine grape plasma membrane 62.7 62.59
KRH37541 Soybean plasma membrane 58.56 59.63
Solyc02g068370.2.1 Tomato nucleus, plasma membrane 58.02 59.19
KRH12592 Soybean plasma membrane 58.02 58.87
PGSC0003DMT400024351 Potato plasma membrane 58.02 58.76
AT1G52310.1 Thale cress plasma membrane 56.94 57.25
CDY47532 Canola plasma membrane 55.68 56.28
Bra014322.1-P Field mustard plasma membrane 55.5 55.9
CDY02544 Canola plasma membrane 54.77 55.68
KXG36063 Sorghum cytosol, plastid 18.74 26.94
EES06400 Sorghum nucleus 18.02 26.74
EER87920 Sorghum mitochondrion 17.3 26.16
EER88757 Sorghum cytosol, plastid 18.92 24.03
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.27Gene3D:3.10.100.10Gene3D:3.30.200.20EntrezGene:8072367InterPro:C-type_lectin-like
InterPro:C-type_lectin-like/link_sfUniProt:C5XF24InterPro:CTDL_foldEnsemblPlants:EES00463ProteinID:EES00463ProteinID:EES00463.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0004674GO:GO:0004713
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0018108GO:GO:0019538InterPro:IPR000719InterPro:IPR001304
InterPro:IPR016186InterPro:Kinase-like_dom_sfPFAM:PF00059PFAM:PF07714ScanProsite:PS00109PFscan:PS50011
PFscan:PS50041PANTHER:PTHR27006PANTHER:PTHR27006:SF5InterPro:Prot_kinase_domSMART:SM00034SMART:SM00219
EnsemblPlantsGene:SORBI_3003G106000SUPFAM:SSF56112SUPFAM:SSF56436unigene:Sbi.4819InterPro:Ser-Thr/Tyr_kinase_cat_domSignalP:SignalP-noTM
TMHMM:TMhelixInterPro:Tyr_kinase_ASInterPro:Tyr_kinase_cat_domUniParc:UPI0001A84959RefSeq:XP_002455343.1SEG:seg
Description
hypothetical protein
Coordinates
chr3:+:9610191..9615113
Molecular Weight (calculated)
61855.3 Da
IEP (calculated)
8.841
GRAVY (calculated)
-0.127
Length
555 amino acids
Sequence
(BLAST)
001: MAVPELAFHL FLAASLLSVA APAVARSPSC PDGWQVGPAQ NKCFMYISTS LSWDRSEALC HNYSGHLAAL SSVQERNFVK SLCGSSSLGC WVGGHHYNTS
101: TGNGWKWSDD SSVWNETVFL GEPLHACSDA ACKVATGSDL CTLVTNNGRV SIIMEKRCSE AHGLICMMNH VDRCYHDHCH KEYFIAIIAV SGFILTTTLA
201: VVVWLLVYRR SKKRRRSREV LSASAAALVA PQWKVFTSEE LRSITKNFSE GNRLPGNAKT GGTYSGILPD GSKVAIKRLK RSSLQRKKDF YSEIRRVAKL
301: YHPNLVAVKG CCYDHGDRFI VYEFVANGPL DVWLHHIPRG GRSLDWAMRM RAATTLAQGI AFLHDKVKPQ VVHRDIRASN VLLDEEFGSH LMGVGLSKFV
401: PWEVMHERTV KAASYGYLAP EFIYRNELTT KSDVYSFGVL LLEIISGRRP AQSVESVGWQ TIFEWATPLV QSHRYLDLLD PHIQELPDTG VIQKVVDLVY
501: SCTQHVPSVR PRMSHVVHQL QQLELKSAAS EQQLRSGTST SATSPMLPLE VRTPR
Best Arabidopsis Sequence Match ( AT1G52310.1 )
(BLAST)
001: MELKWVSCRK QSLFLISCLA LLCLASLDTI SCESTQNATD FKKRSQTVSC PPDWIIGPNQ TKCYAYFKNS TSWEKSEMFC RTYGGHLASL ASSKELSFVQ
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK
Arabidopsis Description
C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Source:UniProtKB/Swiss-Prot;Acc:Q9C823]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.