Factsheet for Solyc02g068370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 8
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024351	Potato	plasma membrane	91.36	90.69
VIT_16s0013g02130.t01	Wine grape	plasma membrane	70.22	68.7
GSMUA_Achr10P...	Banana	plasma membrane	65.26	63.96
KRH37541	Soybean	plasma membrane	63.97	63.85
KRH12592	Soybean	plasma membrane	64.15	63.8
TraesCS3B01G093800.2	Wheat	plasma membrane	61.76	60.98
TraesCS3D01G079200.2	Wheat	plasma membrane	61.58	60.8
AT1G52310.1	Thale cress	plasma membrane	61.21	60.33
Os01t0104000-01	Rice	plasma membrane	61.4	60.18
CDY47532	Canola	plasma membrane	60.66	60.11
CDY02544	Canola	plasma membrane	60.29	60.07
TraesCS3A01G078700.1	Wheat	plasma membrane	61.03	59.93
Bra014322.1-P	Field mustard	plasma membrane	60.48	59.71
Zm00001d040192_P001	Maize	plasma membrane	60.11	58.92
EES00463	Sorghum	plasma membrane	59.19	58.02
HORVU3Hr1G014230.1	Barley	cytosol, mitochondrion, plasma membrane	61.58	54.56
Solyc03g116760.2.1	Tomato	cytosol, endoplasmic reticulum	20.4	30.25
Solyc07g006610.2.1	Tomato	cytosol	18.57	26.17
Solyc03g006890.1.1	Tomato	cytosol	17.46	26.03

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.27	Gene3D:3.10.100.10	Gene3D:3.30.200.20	InterPro:C-type_lectin-like	InterPro:C-type_lectin-like/link_sf
InterPro:CTDL_fold	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004675
GO:GO:0004713	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0007166
GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016740	GO:GO:0018108	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:IPR001304	InterPro:IPR016186	UniProt:K4B7G9	InterPro:Kinase-like_dom_sf	PFAM:PF00059	PFAM:PF07714
ScanProsite:PS00109	PFscan:PS50011	PFscan:PS50041	PANTHER:PTHR27001	PANTHER:PTHR27001:SF85	InterPro:Prot_kinase_dom
SMART:SM00034	SMART:SM00219	SUPFAM:SSF56112	SUPFAM:SSF56436	InterPro:Ser-Thr/Tyr_kinase_cat_dom	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g068370.2	EnsemblPlants:Solyc02g068370.2.1	TMHMM:TMhelix	InterPro:Tyr_kinase_AS	InterPro:Tyr_kinase_cat_dom	UniParc:UPI000276792C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38324628..38329413

Molecular Weight (calculated)

60730.5 Da

IEP (calculated)

9.450

GRAVY (calculated)

-0.102

Length

544 amino acids

Sequence
(BLAST)

001: MAVKLPFPLF LLSCFLLHLC ASTSVSNKTQ VVSSAGNQSH DDGRCDPGWF NGPKGKKCFK YYATSLQWNE SETYCNGFGG NLAAITSSEE LNFVQKLCGN
101: DSNGCWVGGR SINITAGLGW KWSDNASSWN ESIAPKTTLD SSCKNFSCYG FKSVDLCTSI ISGAIIAERC NVTHASICTL DAGSKCRHMR CHREYLIILA
201: VVSGLILCTT LAIVIWLLVF RRSKRRKRSL RASLALVPPS WKIFSRDEVK SMTKNFSEAN RLLGDAKTGG TYSGLLPDGS RVAVKRLKRC GIQRKKEFYS
301: EIGRVARLHH SNLVSIKGCC YHHGDRYILY EFIINGPLDR WLHHIPRGGR SLDWSMRMKV ATTLAQGIAF LHDKMKPQVV HRDIRASNVL LDEEFGAHLM
401: GVGLSKFVPW EIMHERRVMA GGTHGYLAPE FVYRNELTTK SDVYSFGVLL LEIISGRRPA QAVDSVGWQS IFEWATPLVQ AHRYVELLDP LISSSSSSQI
501: PEVGVIQKVV DLVYSCTQHV PSMRPRMSHV VHQLQQLAQP PIVK

Best Arabidopsis Sequence Match ( AT1G52310.1 )
(BLAST)

001: MELKWVSCRK QSLFLISCLA LLCLASLDTI SCESTQNATD FKKRSQTVSC PPDWIIGPNQ TKCYAYFKNS TSWEKSEMFC RTYGGHLASL ASSKELSFVQ
101: KLCNGNVSSC WIGGRSMNSS TSGFRWSWSD PKTPQWNQSM FPKVPIRTRC GNGNGSSSCR ANICIAVTNG SSSIFGERCN ASHAFVCAVD SDIKCRNCHK
201: YLVILAVVSG LILFTTFAII LWLLVYKRSK KRRKSRKVSN PASSSSVVPP SWKIFTSEEL RSMTKNFSEA NRLAGDAKTG GTYSGGLSDG TKVAVKRLKR
301: SSFQRKKEFY SEIRRAAKLY HPNVVAIKGC CYDHGERFIV YEFIASGPLD RWLHHVPRGG RSLDWNMRLN IATTLAQGIA FLHDKVKPQV VHRDIRASNV
401: LLDEEFGAHL MGVGLSKFVP WEVMQERTVM AGGTYGYLAP EYVYRNELTT KSDVYSFGVL LLEIVSGRRP TQAVNSSVGW QSIFEWATPL VQANRWLEIL
501: DPVITCGLPE ACVVQKVVDL VYSCTQNVPS MRPRMSHVVH QLQQLVQPLE VK

Arabidopsis Description

C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Source:UniProtKB/Swiss-Prot;Acc:Q9C823]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.