Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73242 | Canola | cytosol | 91.3 | 94.03 |
| CDX87629 | Canola | cytosol | 91.3 | 94.03 |
| CDY46007 | Canola | cytosol | 79.71 | 91.67 |
| Bra003730.1-P | Field mustard | cytosol | 85.51 | 90.77 |
| CDX68107 | Canola | cytosol | 86.96 | 89.55 |
| CDX85939 | Canola | cytosol | 81.16 | 86.15 |
| CDY50906 | Canola | cytosol | 71.01 | 85.96 |
| VIT_18s0001g00230.t01 | Wine grape | cytosol, extracellular, golgi, mitochondrion | 60.87 | 79.25 |
| KRH29130 | Soybean | cytosol | 76.81 | 79.1 |
| PGSC0003DMT400025629 | Potato | cytosol | 72.46 | 76.92 |
| KRH24165 | Soybean | cytosol | 73.91 | 76.12 |
| GSMUA_Achr9P21130_001 | Banana | cytosol | 79.71 | 72.37 |
| GSMUA_Achr1P07350_001 | Banana | cytosol | 73.91 | 65.38 |
| Os06t0725400-01 | Rice | cytosol, mitochondrion, peroxisome | 68.12 | 64.38 |
| Os05t0122900-01 | Rice | cytosol | 75.36 | 64.2 |
| KXG22420 | Sorghum | cytosol | 71.01 | 61.25 |
| Zm00001d038839_P002 | Maize | mitochondrion | 71.01 | 61.25 |
| TraesCS7A01G546400.1 | Wheat | cytosol | 71.01 | 59.04 |
| TraesCS7D01G532600.1 | Wheat | cytosol | 71.01 | 59.04 |
| TraesCS7B01G469400.1 | Wheat | cytosol | 69.57 | 57.14 |
| GSMUA_Achr2P03600_001 | Banana | cytosol | 73.91 | 56.67 |
| Zm00001d011136_P001 | Maize | cytosol | 68.12 | 52.22 |
Protein Annotations
| MapMan:2.4.1.4.2.1 | EntrezGene:843953 | UniProt:A0A178WMC2 | EMBL:AC009978 | ProteinID:AEE35810.1 | EMBL:AK226354 |
| ArrayExpress:AT1G76200 | EnsemblPlantsGene:AT1G76200 | RefSeq:AT1G76200 | TAIR:AT1G76200 | RefSeq:AT1G76200-TAIR-G | EnsemblPlants:AT1G76200.1 |
| TAIR:AT1G76200.1 | EMBL:AY085964 | EMBL:BT025697 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0005747 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0055114 | GO:GO:0070469 | RefSeq:NP_565128.1 | ProteinID:OAP19427.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR36987 | UniProt:Q8LDK3 | UniParc:UPI00000A1242 | SEG:seg |
Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDK3]
Coordinates
chr1:+:28593211..28594750
Molecular Weight (calculated)
7568.0 Da
IEP (calculated)
9.244
GRAVY (calculated)
-0.536
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH GDHGHGDHH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.