Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87629 | Canola | cytosol | 100.0 | 100.0 |
| CDY46007 | Canola | cytosol | 86.57 | 96.67 |
| CDX68107 | Canola | cytosol | 95.52 | 95.52 |
| CDX85939 | Canola | cytosol | 89.55 | 92.31 |
| AT1G76200.1 | Thale cress | cytosol | 94.03 | 91.3 |
| CDY50906 | Canola | cytosol | 76.12 | 89.47 |
| VIT_18s0001g00230.t01 | Wine grape | cytosol, extracellular, golgi, mitochondrion | 58.21 | 73.58 |
| KRH29130 | Soybean | cytosol | 73.13 | 73.13 |
| PGSC0003DMT400025629 | Potato | cytosol | 70.15 | 72.31 |
| KRH24165 | Soybean | cytosol | 71.64 | 71.64 |
| GSMUA_Achr9P21130_001 | Banana | cytosol | 77.61 | 68.42 |
| Os06t0725400-01 | Rice | cytosol, mitochondrion, peroxisome | 68.66 | 63.01 |
| Os05t0122900-01 | Rice | cytosol | 73.13 | 60.49 |
| GSMUA_Achr1P07350_001 | Banana | cytosol | 70.15 | 60.26 |
| KXG22420 | Sorghum | cytosol | 71.64 | 60.0 |
| Zm00001d038839_P002 | Maize | mitochondrion | 71.64 | 60.0 |
| TraesCS7A01G546400.1 | Wheat | cytosol | 71.64 | 57.83 |
| TraesCS7D01G532600.1 | Wheat | cytosol | 71.64 | 57.83 |
| TraesCS7B01G469400.1 | Wheat | cytosol | 70.15 | 55.95 |
| GSMUA_Achr2P03600_001 | Banana | cytosol | 70.15 | 52.22 |
| Zm00001d011136_P001 | Maize | cytosol | 68.66 | 51.11 |
Protein Annotations
| EnsemblPlants:CDX73242 | EnsemblPlantsGene:GSBRNA2T00103744001 | GO:A0A078DGU4 | PANTHER:PTHR36987 | ProteinID:CDX73242 | ProteinID:CDX73242.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0000E6473C | MapMan:2.4.1.4.2.1 | : | : |
Description
BnaC06g36900D
Coordinates
chrLK031797:+:2840261..2841757
Molecular Weight (calculated)
7329.8 Da
IEP (calculated)
9.243
GRAVY (calculated)
-0.494
Length
67 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGGITYK GVTVHTPKTW HTVAGKGLCG VMWFWILYRA KQDGPVVMGW RHPWDGHGDH GHGGDHH
1: MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH GDHGHGDHH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.