Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003730.1-P | Field mustard | cytosol | 95.38 | 95.38 |
| CDY46007 | Canola | cytosol | 86.15 | 93.33 |
| CDX68107 | Canola | cytosol | 93.85 | 91.04 |
| CDX73242 | Canola | cytosol | 92.31 | 89.55 |
| CDX87629 | Canola | cytosol | 92.31 | 89.55 |
| CDY50906 | Canola | cytosol | 75.38 | 85.96 |
| AT1G76200.1 | Thale cress | cytosol | 86.15 | 81.16 |
| PGSC0003DMT400025629 | Potato | cytosol | 66.15 | 66.15 |
| VIT_18s0001g00230.t01 | Wine grape | cytosol, extracellular, golgi, mitochondrion | 53.85 | 66.04 |
| KRH29130 | Soybean | cytosol | 66.15 | 64.18 |
| KRH24165 | Soybean | cytosol | 64.62 | 62.69 |
| GSMUA_Achr9P21130_001 | Banana | cytosol | 70.77 | 60.53 |
| Os06t0725400-01 | Rice | cytosol, mitochondrion, peroxisome | 63.08 | 56.16 |
| Os05t0122900-01 | Rice | cytosol | 67.69 | 54.32 |
| GSMUA_Achr1P07350_001 | Banana | cytosol | 64.62 | 53.85 |
| KXG22420 | Sorghum | cytosol | 66.15 | 53.75 |
| Zm00001d038839_P002 | Maize | mitochondrion | 66.15 | 53.75 |
| TraesCS7A01G546400.1 | Wheat | cytosol | 66.15 | 51.81 |
| TraesCS7D01G532600.1 | Wheat | cytosol | 66.15 | 51.81 |
| TraesCS7B01G469400.1 | Wheat | cytosol | 64.62 | 50.0 |
| GSMUA_Achr2P03600_001 | Banana | cytosol | 66.15 | 47.78 |
| Zm00001d011136_P001 | Maize | cytosol | 63.08 | 45.56 |
Protein Annotations
| EnsemblPlants:CDX85939 | EnsemblPlantsGene:GSBRNA2T00143778001 | GO:A0A078DC50 | PANTHER:PTHR36987 | ProteinID:CDX85939 | ProteinID:CDX85939.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE1031 | MapMan:2.4.1.4.2.1 | : | : |
Description
BnaC06g21950D
Coordinates
chrLK031843:+:958618..959902
Molecular Weight (calculated)
7172.6 Da
IEP (calculated)
9.240
GRAVY (calculated)
-0.429
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGVGGGMTY KGVSVQTPKT WHTVAGKGLC GVMWFWILYR AKQDGPVVMG WRHPWDGHGD HGDHH
1: MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH GDHGHGDHH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.