Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 1
- mitochondrion 2
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29130 | Soybean | cytosol | 83.02 | 65.67 |
| KRH24165 | Soybean | cytosol | 81.13 | 64.18 |
| AT1G76200.1 | Thale cress | cytosol | 79.25 | 60.87 |
| PGSC0003DMT400025629 | Potato | cytosol | 73.58 | 60.0 |
| CDX73242 | Canola | cytosol | 73.58 | 58.21 |
| CDX87629 | Canola | cytosol | 73.58 | 58.21 |
| GSMUA_Achr9P21130_001 | Banana | cytosol | 83.02 | 57.89 |
| Bra003730.1-P | Field mustard | cytosol | 66.04 | 53.85 |
| GSMUA_Achr1P07350_001 | Banana | cytosol | 79.25 | 53.85 |
| CDX85939 | Canola | cytosol | 66.04 | 53.85 |
| CDX68107 | Canola | cytosol | 67.92 | 53.73 |
| Os06t0725400-01 | Rice | cytosol, mitochondrion, peroxisome | 73.58 | 53.42 |
| CDY46007 | Canola | cytosol | 60.38 | 53.33 |
| CDY50906 | Canola | cytosol | 54.72 | 50.88 |
| Os05t0122900-01 | Rice | cytosol | 73.58 | 48.15 |
| KXG22420 | Sorghum | cytosol | 71.7 | 47.5 |
| Zm00001d038839_P002 | Maize | mitochondrion | 71.7 | 47.5 |
| TraesCS7A01G546400.1 | Wheat | cytosol | 73.58 | 46.99 |
| TraesCS7D01G532600.1 | Wheat | cytosol | 73.58 | 46.99 |
| GSMUA_Achr2P03600_001 | Banana | cytosol | 79.25 | 46.67 |
| TraesCS7B01G469400.1 | Wheat | cytosol | 73.58 | 46.43 |
| Zm00001d011136_P001 | Maize | cytosol | 69.81 | 41.11 |
Protein Annotations
| ArrayExpress:VIT_18s0001g00230 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g00230.t01 | EnsemblPlantsGene:VIT_18s0001g00230 | EntrezGene:100260759 | EntrezGene:LOC100260759 |
| PANTHER:PTHR36987 | ProteinID:CBI18878 | ProteinID:CBI18878.3 | RefSeq:XP_002285922 | RefSeq:XP_002285922.1 | SEG:seg |
| TIGR:TC64464 | TIGR:TC65360 | unigene:Vvi.4757 | UniParc:UPI0001BE1757 | UniProt:E0CQS4 | wikigene:100260759 |
| wikigene:LOC100260759 | MapMan:2.4.1.4.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr18:-:1238507..1246252
Molecular Weight (calculated)
6360.6 Da
IEP (calculated)
8.575
GRAVY (calculated)
-0.868
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: MHHPKRWHTI TGKGLCAIMW FWVMYRAKQD GPVVLGWRHP WEGHDEHGHG DHH
1: MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH GDHGHGDHH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.