Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 3
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P07350_001 | Banana | cytosol | 73.33 | 84.62 |
| GSMUA_Achr9P21130_001 | Banana | cytosol | 67.78 | 80.26 |
| VIT_18s0001g00230.t01 | Wine grape | cytosol, extracellular, golgi, mitochondrion | 46.67 | 79.25 |
| KRH29130 | Soybean | cytosol | 56.67 | 76.12 |
| KRH24165 | Soybean | cytosol | 55.56 | 74.63 |
| AT1G76200.1 | Thale cress | cytosol | 56.67 | 73.91 |
| PGSC0003DMT400025629 | Potato | cytosol | 53.33 | 73.85 |
| CDY46007 | Canola | cytosol | 47.78 | 71.67 |
| CDX73242 | Canola | cytosol | 52.22 | 70.15 |
| CDX87629 | Canola | cytosol | 52.22 | 70.15 |
| Bra003730.1-P | Field mustard | cytosol | 50.0 | 69.23 |
| CDX68107 | Canola | cytosol | 51.11 | 68.66 |
| Os06t0725400-01 | Rice | cytosol, mitochondrion, peroxisome | 54.44 | 67.12 |
| CDX85939 | Canola | cytosol | 47.78 | 66.15 |
| Os05t0122900-01 | Rice | cytosol | 58.89 | 65.43 |
| CDY50906 | Canola | cytosol | 40.0 | 63.16 |
| KXG22420 | Sorghum | cytosol | 55.56 | 62.5 |
| Zm00001d038839_P002 | Maize | mitochondrion | 55.56 | 62.5 |
| TraesCS7B01G469400.1 | Wheat | cytosol | 54.44 | 58.33 |
| TraesCS7A01G546400.1 | Wheat | cytosol | 52.22 | 56.63 |
| TraesCS7D01G532600.1 | Wheat | cytosol | 52.22 | 56.63 |
| Zm00001d011136_P001 | Maize | cytosol | 52.22 | 52.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P03600_001 | EnsemblPlants:GSMUA_Achr2T03600_001 | EnsemblPlantsGene:GSMUA_Achr2G03600_001 | PANTHER:PTHR36987 | SEG:seg | UniParc:UPI000296F234 |
| UniProt:M0S4V1 | MapMan:2.4.1.4.2.1 | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G03600_001]
Coordinates
chr2:+:9257103..9259859
Molecular Weight (calculated)
10203.2 Da
IEP (calculated)
8.063
GRAVY (calculated)
-0.464
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGGGHGES TTYKGFTIHH PKRWHVVTGK GLCAIMWFWV LYRAKQDGPV VLGWHHPWEG HGDHSHDHEV RQCNLCLEFI GCLHRHGNIS
1: MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH GDHGHGDHH
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDK3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.