Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019530.1-P | Field mustard | cytosol | 84.8 | 86.41 |
| CDY21811 | Canola | cytosol | 85.6 | 82.77 |
| CDX77893 | Canola | cytosol | 27.55 | 82.1 |
| CDX77892 | Canola | cytosol | 46.1 | 82.0 |
| VIT_17s0000g08360.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, vacuole | 26.22 | 72.61 |
| Solyc03g112950.2.1 | Tomato | cytosol | 32.43 | 65.09 |
| KRH63528 | Soybean | cytosol, nucleus, plasma membrane | 58.94 | 58.56 |
| VIT_17s0000g08350.t01 | Wine grape | extracellular | 8.93 | 55.69 |
| Os01t0106700-00 | Rice | cytosol | 41.79 | 51.47 |
| Solyc03g112940.2.1 | Tomato | cytosol | 24.43 | 49.4 |
| GSMUA_Achr6P09120_001 | Banana | cytosol | 7.73 | 49.16 |
| OQU86543 | Sorghum | cytosol | 48.79 | 48.43 |
| TraesCS1A01G329400.1 | Wheat | cytosol | 47.66 | 47.64 |
| TraesCS1B01G342800.2 | Wheat | cytosol | 47.56 | 47.64 |
| TraesCS1D01G331500.2 | Wheat | cytosol | 47.59 | 47.56 |
| HORVU3Hr1G000420.22 | Barley | mitochondrion | 46.13 | 46.88 |
| Zm00001d040166_P014 | Maize | nucleus, plastid | 46.83 | 44.16 |
| VIT_17s0000g08330.t01 | Wine grape | extracellular, mitochondrion, nucleus, plasma membrane | 7.87 | 42.63 |
| AT5G40820.2 | Thale cress | cytosol, nucleus, plasma membrane | 15.86 | 17.68 |
| AT1G50030.1 | Thale cress | plastid | 12.81 | 15.56 |
Protein Annotations
Description
ATMSerine/Threonine-kinase ATM-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ79]
Coordinates
chr3:+:17801289..17828553
Molecular Weight (calculated)
341557.0 Da
IEP (calculated)
6.982
GRAVY (calculated)
-0.155
Length
3013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVASRDVHEI VSKLSSDKAK TREDGVKLLN TWLEGERSIT FCRFLSQNTA KLKLDEIPNA ETWPFLVKLL LQCVSMEVSG SKRRMPKPTF AKTLRVVVQR
0101: TEETKFPGVQ FPLLSMAKTL FTHVHDILSN TPSFQSEYGT ILRHLLEIKE YRFQMRKRTY SSLVLLYMER AETGFCEKNS GQHSQKEEAF RYILTLQSLL
0201: ENSPGDFPDD LREEIVNGLI HIFSSVRDEG KLSRKLIECV NTFLLKDGPN LGSLSLEIHN AVEQFVFRCW LTTHDKNLKE ILVSYGRLQL NLTRDSSESS
0301: SLVEQLLDVV TRELDLGSSS SSASWGDTTK DEKLGALSSY QNSLVELAAH VFYRACVNTS RPSLSEKRAR RQHIAMRMVD ALTEGKWLWC AAFGCLVRNY
0401: CARINMDLLI YWFEAICTNF QRLLEDASMR RSYDGLLWTL RSLQGLSSGL SLPDITMDIS KSSASSSELD RGWQSIWSSL IHGLATFSSM SVIVDAVLVL
0501: LGSIISSNHI TVKILPQEVW DHQLFRHIPS EPALYFIACY FSRMGCQGNL QDDLHLRRNL LRAVCAPLSW KVRLTLDERM VQLLPAAAFS LCAGFKVSLP
0601: LPKEHLPTPS QWDVCEQIDD VDRERNFGLF ECSVEALTRI CSNSSKISGC QVPDVVQLPL VLRDPLLHDM DIYFLSIIPE VKEKGPLSDI FMGCALLCHF
0701: MHGSYITRKG KGSSSFFLKA CQYLLEGLDH AVESVSKSLN DLQRRGSLGF GSDFNEKGSI IVSLRSFTQS PVFSNRRDQN LLGASYDFVI HSLENLLRSF
0801: AKVYEEYTEH AWNTHSDTVP SKSLAPDSPE VGRIVDMDLD LAEDTKERDI IAAGGKAVPG LPVSMGNWKL GMVSLISCFS PVLQFPTWDV LYNLLEKESD
0901: PKVLENILYH LCKLSCLTSI PKVDDLVIFL DGMLSTQVKM KRNCLNIVTA LHVLLHTLSS SRRDSSGVEK NCGLSLKEAE SFQVFVQLGA MVNKVSEFGL
1001: LGWFGRVKLI NCICDLVLLN PQTGQTMIER LLLMLSDSDY RVRFVLARQI GILFQTWDGH EALFQDICSS FGIKLVTSSK EKLVTAKDVL AVGPQPRQKM
1101: ETVIITLMHL AYHSENIELQ AVFMMCAVSA KDPCQRELII AALDNLSAQL HYPSRFKYLE ELLGPILFHW IASGVSLAGL IETSQLFIPN AEPKYFIHFC
1201: SHWLLPALLL HEDHTNLDWV AKMAGQPVVV LVKENFVPIF SICMGLHCSK TSECDKGAMV LQNSILYVGE TSENERDKLI KQNMVSIVSF ILSCASSSPE
1301: PPVPTFSRDT ISLAVQTVVD GFLENTDYPK NAAITDRINI FRPDRVFMFI TEMHYRMSAA CHHRHTRHHL AALEELTILL GHRALVPSSL NYIFNLVGQF
1401: IGYPSLQDQC CSIASCLLDL FKSNPAKEIV SVLGDQLQFL VSKLVTCCID AEADTKISGA KSSQLVNLLH KLVVSSDSSL NEDIRDLEPL PDLKYFQVIR
1501: ESHIRICEAY SPRNHLLKCS RRSNYLPPRF LSRSLQALHN KLIASEVSQE DTNGETAETF WQSDDEIVNA VWTLVRVSAS DEADSMRLLV SDFLSRIGIR
1601: DPHTVVFHLP GNLVSMHGLQ GFGHNTGSKV RSLTENGISD ETLITLLNFL KKYLLDDSVK IIDVTSQTLR GILSTERGQQ ALSSFDSCER ALIEVHGRGV
1701: NLDIVEKILL DSQKQFKAEK FSLETPEVWS TDNKNFDRWI CQLVYCMIAL CEDVPIRLCQ NIALLKAEIS ELLFPSVVVS LAGRIGMDIN LHDLITSQVK
1801: EHIFTDSNKL TKSKQVMLNT LNELRMCYVL ERSIFSGQTK REKNSRSCST AAKIRDVESG SNGMAASITT NWEKVYWLSI DYLVVAGSAV VCGAYLTASM
1901: YVEYWCEEKF GNLSLGDPDF SYHDKLPDHV EILVSAITRI NEPDSLYGVI HSNKLSAQII TFEHEGNWTR ALEYYDLQAR SQKMVVPSSL SENLEVEQFQ
2001: PTTSARHSVF GEGEVQRQPF KGLIRSLQQT GCMHVLDLYC RGLTSREGCF QYDPEFIELQ YEAAWRAGKW DFSLLYPQTH CQPLQHAKNN NYHESLHCCL
2101: RALQEGDYDG FYGKLKDTKK ELVLSISRAS EESTEFIYST VVKLQILHHL GLVWDLRWTT SSHQSVHGYL VKQMACVDPV IPTMDQLSWL NKDWNSIITQ
2201: TQLHMTLLEP FIAFRRVLLQ ILGCEKCTMQ HLLQSASLLR KGTRFSHAAA SLHEFKFLCA RSNGQQPVPD WLGKLEEAKL LHAQGRHEVS ISLANYILHN
2301: YQLKEEASDI YRVIGKWLAE TRSSNSRTIL EKYLRPAVSL AEEQSSKICK RLVDRQSQTW FHLAHYADAL FKSYEERLSS SEWQAALRLR KHKTKELEVL
2401: IKRFKSSKKA EQSDYSLKIQ DLQKQLTMDK EEAEKLQVDR DNFLKLALEG YKRCLEIGDK YDVRVVFRQV SMWFSLASQK NVIDNMLSTI KEVQSYKFIP
2501: LVYQIASRLG SSKDESGSNS FQSALVSLIR KMAIDHPYHT ILQLLALANG DRIKDNQRSR NSFVVDMDKK LAAEHLLQDV SHYHGPMIRQ MKQLVDIYIK
2601: LAELETRRED TNRKVALPRE IRSVKQLELV PVVTATIPVD RSCQYNEGSF PFFRGLSDSV TVMNGINAPK VVECFGSDGQ KYKQLAKSGN DDLRQDAVME
2701: QFFGLVNTFL HNNRDTWKRR LAVRTYKVIP FTPSAGVLEW VDGTIPLGDY LIGSSRSEGA HGRYGIGNWK YPKCREHMSS AKDKRKAFVD VCTNFRPVMH
2801: YFFLEKFLQP ADWFVKRLAY TRSVAASSMV GYIVGLGDRH AMNILIDQAT AEVVHIDLGV AFEQGLMLKT PERVPFRLTR DIIDGMGITG VEGVFRRCCE
2901: ETLSVMRTNK EALLTIVEVF IHDPLYKWAL SPLKALQRQK ETEDYDGMNL EGLQEEFEGN KDATRALMRV KQKLDGYEGG EMRSIHGQAQ QLIQDAIDTD
3001: RLSHMFPGWG AWM
0101: TEETKFPGVQ FPLLSMAKTL FTHVHDILSN TPSFQSEYGT ILRHLLEIKE YRFQMRKRTY SSLVLLYMER AETGFCEKNS GQHSQKEEAF RYILTLQSLL
0201: ENSPGDFPDD LREEIVNGLI HIFSSVRDEG KLSRKLIECV NTFLLKDGPN LGSLSLEIHN AVEQFVFRCW LTTHDKNLKE ILVSYGRLQL NLTRDSSESS
0301: SLVEQLLDVV TRELDLGSSS SSASWGDTTK DEKLGALSSY QNSLVELAAH VFYRACVNTS RPSLSEKRAR RQHIAMRMVD ALTEGKWLWC AAFGCLVRNY
0401: CARINMDLLI YWFEAICTNF QRLLEDASMR RSYDGLLWTL RSLQGLSSGL SLPDITMDIS KSSASSSELD RGWQSIWSSL IHGLATFSSM SVIVDAVLVL
0501: LGSIISSNHI TVKILPQEVW DHQLFRHIPS EPALYFIACY FSRMGCQGNL QDDLHLRRNL LRAVCAPLSW KVRLTLDERM VQLLPAAAFS LCAGFKVSLP
0601: LPKEHLPTPS QWDVCEQIDD VDRERNFGLF ECSVEALTRI CSNSSKISGC QVPDVVQLPL VLRDPLLHDM DIYFLSIIPE VKEKGPLSDI FMGCALLCHF
0701: MHGSYITRKG KGSSSFFLKA CQYLLEGLDH AVESVSKSLN DLQRRGSLGF GSDFNEKGSI IVSLRSFTQS PVFSNRRDQN LLGASYDFVI HSLENLLRSF
0801: AKVYEEYTEH AWNTHSDTVP SKSLAPDSPE VGRIVDMDLD LAEDTKERDI IAAGGKAVPG LPVSMGNWKL GMVSLISCFS PVLQFPTWDV LYNLLEKESD
0901: PKVLENILYH LCKLSCLTSI PKVDDLVIFL DGMLSTQVKM KRNCLNIVTA LHVLLHTLSS SRRDSSGVEK NCGLSLKEAE SFQVFVQLGA MVNKVSEFGL
1001: LGWFGRVKLI NCICDLVLLN PQTGQTMIER LLLMLSDSDY RVRFVLARQI GILFQTWDGH EALFQDICSS FGIKLVTSSK EKLVTAKDVL AVGPQPRQKM
1101: ETVIITLMHL AYHSENIELQ AVFMMCAVSA KDPCQRELII AALDNLSAQL HYPSRFKYLE ELLGPILFHW IASGVSLAGL IETSQLFIPN AEPKYFIHFC
1201: SHWLLPALLL HEDHTNLDWV AKMAGQPVVV LVKENFVPIF SICMGLHCSK TSECDKGAMV LQNSILYVGE TSENERDKLI KQNMVSIVSF ILSCASSSPE
1301: PPVPTFSRDT ISLAVQTVVD GFLENTDYPK NAAITDRINI FRPDRVFMFI TEMHYRMSAA CHHRHTRHHL AALEELTILL GHRALVPSSL NYIFNLVGQF
1401: IGYPSLQDQC CSIASCLLDL FKSNPAKEIV SVLGDQLQFL VSKLVTCCID AEADTKISGA KSSQLVNLLH KLVVSSDSSL NEDIRDLEPL PDLKYFQVIR
1501: ESHIRICEAY SPRNHLLKCS RRSNYLPPRF LSRSLQALHN KLIASEVSQE DTNGETAETF WQSDDEIVNA VWTLVRVSAS DEADSMRLLV SDFLSRIGIR
1601: DPHTVVFHLP GNLVSMHGLQ GFGHNTGSKV RSLTENGISD ETLITLLNFL KKYLLDDSVK IIDVTSQTLR GILSTERGQQ ALSSFDSCER ALIEVHGRGV
1701: NLDIVEKILL DSQKQFKAEK FSLETPEVWS TDNKNFDRWI CQLVYCMIAL CEDVPIRLCQ NIALLKAEIS ELLFPSVVVS LAGRIGMDIN LHDLITSQVK
1801: EHIFTDSNKL TKSKQVMLNT LNELRMCYVL ERSIFSGQTK REKNSRSCST AAKIRDVESG SNGMAASITT NWEKVYWLSI DYLVVAGSAV VCGAYLTASM
1901: YVEYWCEEKF GNLSLGDPDF SYHDKLPDHV EILVSAITRI NEPDSLYGVI HSNKLSAQII TFEHEGNWTR ALEYYDLQAR SQKMVVPSSL SENLEVEQFQ
2001: PTTSARHSVF GEGEVQRQPF KGLIRSLQQT GCMHVLDLYC RGLTSREGCF QYDPEFIELQ YEAAWRAGKW DFSLLYPQTH CQPLQHAKNN NYHESLHCCL
2101: RALQEGDYDG FYGKLKDTKK ELVLSISRAS EESTEFIYST VVKLQILHHL GLVWDLRWTT SSHQSVHGYL VKQMACVDPV IPTMDQLSWL NKDWNSIITQ
2201: TQLHMTLLEP FIAFRRVLLQ ILGCEKCTMQ HLLQSASLLR KGTRFSHAAA SLHEFKFLCA RSNGQQPVPD WLGKLEEAKL LHAQGRHEVS ISLANYILHN
2301: YQLKEEASDI YRVIGKWLAE TRSSNSRTIL EKYLRPAVSL AEEQSSKICK RLVDRQSQTW FHLAHYADAL FKSYEERLSS SEWQAALRLR KHKTKELEVL
2401: IKRFKSSKKA EQSDYSLKIQ DLQKQLTMDK EEAEKLQVDR DNFLKLALEG YKRCLEIGDK YDVRVVFRQV SMWFSLASQK NVIDNMLSTI KEVQSYKFIP
2501: LVYQIASRLG SSKDESGSNS FQSALVSLIR KMAIDHPYHT ILQLLALANG DRIKDNQRSR NSFVVDMDKK LAAEHLLQDV SHYHGPMIRQ MKQLVDIYIK
2601: LAELETRRED TNRKVALPRE IRSVKQLELV PVVTATIPVD RSCQYNEGSF PFFRGLSDSV TVMNGINAPK VVECFGSDGQ KYKQLAKSGN DDLRQDAVME
2701: QFFGLVNTFL HNNRDTWKRR LAVRTYKVIP FTPSAGVLEW VDGTIPLGDY LIGSSRSEGA HGRYGIGNWK YPKCREHMSS AKDKRKAFVD VCTNFRPVMH
2801: YFFLEKFLQP ADWFVKRLAY TRSVAASSMV GYIVGLGDRH AMNILIDQAT AEVVHIDLGV AFEQGLMLKT PERVPFRLTR DIIDGMGITG VEGVFRRCCE
2901: ETLSVMRTNK EALLTIVEVF IHDPLYKWAL SPLKALQRQK ETEDYDGMNL EGLQEEFEGN KDATRALMRV KQKLDGYEGG EMRSIHGQAQ QLIQDAIDTD
3001: RLSHMFPGWG AWM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.