Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 5
- plasma membrane 4
- vacuole 5
- golgi 5
- extracellular 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0056g00590.t01 | Wine grape | vacuole | 73.8 | 75.45 |
| VIT_05s0020g00350.t01 | Wine grape | extracellular | 38.43 | 72.73 |
| HORVU6Hr1G085080.1 | Barley | endoplasmic reticulum, vacuole | 14.41 | 68.75 |
| Solyc01g007370.2.1 | Tomato | nucleus | 62.45 | 62.45 |
| HORVU0Hr1G034630.1 | Barley | endoplasmic reticulum, plasma membrane | 34.06 | 60.94 |
| HORVU5Hr1G065150.1 | Barley | golgi, plasma membrane, vacuole | 41.05 | 60.26 |
| GRMZM5G831540_P01 | Maize | plastid | 60.26 | 60.0 |
| AGP50766 | Barley | golgi, plasma membrane, vacuole | 58.95 | 58.7 |
| HORVU6Hr1G049290.1 | Barley | golgi, plasma membrane, vacuole | 58.95 | 58.7 |
| HORVU7Hr1G065940.1 | Barley | endoplasmic reticulum | 39.3 | 57.69 |
| CAA33960 | Rice | golgi | 57.21 | 56.96 |
| TraesCS3B01G287400.1 | Wheat | golgi | 57.21 | 55.98 |
| HORVU1Hr1G089450.1 | Barley | cytosol | 13.54 | 55.36 |
| HORVU6Hr1G023000.1 | Barley | cytosol | 55.02 | 54.78 |
| HORVU5Hr1G120160.1 | Barley | cytosol, golgi, mitochondrion | 20.96 | 48.0 |
| KRH62836 | Soybean | cytosol | 20.96 | 44.04 |
| AT4G31040.1 | Thale cress | plastid | 19.65 | 10.27 |
Protein Annotations
| MapMan:35.1 | EntrezGene:844747 | UniProt:A0A1B1W4V5 | ProteinID:ANW47802.1 | ArrayExpress:ATCG00530 | EnsemblPlantsGene:ATCG00530 |
| RefSeq:ATCG00530 | TAIR:ATCG00530 | RefSeq:ATCG00530-TAIR-G | EnsemblPlants:ATCG00530.1 | TAIR:ATCG00530.1 | ProteinID:BAA84397.1 |
| InterPro:CemA | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009528 |
| GO:GO:0009536 | GO:GO:0009706 | GO:GO:0015078 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:1902600 | HAMAP:MF_01308 | RefSeq:NP_051071.1 | UniProt:P56783 | PFAM:PF03040 | PANTHER:PTHR33650 |
| PANTHER:PTHR33650:SF2 | TMHMM:TMhelix | UniParc:UPI00001274DE | Symbol:YCF10 | : | : |
Description
CEMAenvelope membrane protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4V5]
Coordinates
chrPt:+:60741..61430
Molecular Weight (calculated)
27406.4 Da
IEP (calculated)
6.945
GRAVY (calculated)
0.217
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKKKAFIPF FYFLSIVFLP WLISLCCNKS LKTWITNWWN TRQCETFLND IQEKSFLEKF IQLEELFQLD EMIKEYPETN LQQFRLGIHK ETIQFIKIHN
101: EYNIHTILHF STNLISFVIL SGYSFWGKEK LFILNSWVQE FLYNLSDTIK AFSILLLTDL CIGFHSPHGW ELMIGYIYKD FGFAHYEQIL SGLVSTFPVI
201: LDTIFKYWIF RYLNRVSPSL VVIYHAIND
101: EYNIHTILHF STNLISFVIL SGYSFWGKEK LFILNSWVQE FLYNLSDTIK AFSILLLTDL CIGFHSPHGW ELMIGYIYKD FGFAHYEQIL SGLVSTFPVI
201: LDTIFKYWIF RYLNRVSPSL VVIYHAIND
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.