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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68718 Canola plastid 88.36 88.97
Bra011243.1-P Field mustard plastid 88.36 88.76
CDY28239 Canola plastid 87.9 88.71
CDY13408 Canola cytosol 55.48 78.9
Bra024027.1-P Field mustard golgi, plasma membrane, vacuole 32.42 76.76
VIT_11s0065g00180.t01 Wine grape mitochondrion 63.24 66.75
KRH46833 Soybean plastid 62.33 63.05
KRH74128 Soybean plastid 61.64 62.36
GSMUA_Achr10P... Banana plastid 55.48 55.99
Os08t0224300-01 Rice cytosol, mitochondrion, plasma membrane, plastid 51.83 53.16
OQU93422 Sorghum plastid 48.63 49.31
Zm00001d048524_P002 Maize plastid 47.72 49.18
OQU93423 Sorghum mitochondrion 47.26 48.82
TraesCS7A01G286400.1 Wheat plastid 46.8 48.69
TraesCS7B01G196800.3 Wheat plastid 46.8 48.69
TraesCS7D01G283700.2 Wheat plastid 46.8 48.69
Solyc07g042810.1.1 Tomato cytosol 6.85 48.39
HORVU7Hr1G063720.1 Barley plastid 46.8 48.24
Solyc07g042800.2.1 Tomato plastid 23.52 37.87
Zm00001d027320_P002 Maize plastid 48.63 21.43
ATCG00530.1 Thale cress endoplasmic reticulum, golgi, vacuole 10.27 19.65
Protein Annotations
MapMan:35.1EntrezGene:829231ProteinID:AEE85850.1EMBL:AK175421EMBL:AK175545EMBL:AK176540
EMBL:AK176545EMBL:AK176829EMBL:AK230354ArrayExpress:AT4G31040EnsemblPlantsGene:AT4G31040RefSeq:AT4G31040
TAIR:AT4G31040RefSeq:AT4G31040-TAIR-GEnsemblPlants:AT4G31040.1TAIR:AT4G31040.1EMBL:AY080750Unigene:At.42944
EMBL:BT006145InterPro:CemAncoils:CoilGO:GO:0005575GO:GO:0008150GO:GO:0016020
GO:GO:0016021RefSeq:NP_567865.1PFAM:PF03040PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281PANTHER:PTHR33650PANTHER:PTHR33650:SF1UniProt:Q8RXP7
TMHMM:TMhelixUniParc:UPI00000A9DA7SEG:seg:::
Description
CemA-like proton extrusion protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP7]
Coordinates
chr4:-:15111477..15114126
Molecular Weight (calculated)
51023.9 Da
IEP (calculated)
4.725
GRAVY (calculated)
-0.325
Length
438 amino acids
Sequence
(BLAST)
001: MSLMSSSMVL CHCLSFSSQN PDPESSSSSL LRYKPCDSIS LWGKRRKKLW RFVPSAEKNN SHTGNNNKRR RSWWQRFFFD DDGNWLGLRD DDIVDETTEL
101: AKDDEMSDEE KFETWKRRAE AIVELREGQE EIGDSGVVAD VTKKWEDWIV DSDDSFVESW TRDSAGSDDN LELDELTIPD GGLVKMVRDM VLGAEEEDIL
201: YEDRIFRYAS SKSAKFLAVL ILIPWALDFL AHDYLLMPFL DRYVKTVPLA AQTLDVRRNQ KLEMVKELNR EKARYRLEVE IGKSPPLSDD DLWWEMRGKA
301: LELRDEWRLE NRKAFANIWS DMVFGISLFV LLYANQGRVA LLKFTGYKII NNISDTGKAF LIILITDIFL GYHSESGWET LLEIIMEHYG LEVEQSTITI
401: FICLVPVIMD ACVKLWLFKF LPRLSPRVSN IFQEMKRH
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.