Factsheet for VIT_11s0065g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024027.1-P	Field mustard	golgi, plasma membrane, vacuole	30.36	68.11
KRH74128	Soybean	plastid	68.92	66.05
KRH46833	Soybean	plastid	68.67	65.82
CDY13408	Canola	cytosol	48.19	64.94
CDX68718	Canola	plastid	66.75	63.68
CDY28239	Canola	plastid	66.51	63.59
Bra011243.1-P	Field mustard	plastid	66.75	63.53
AT4G31040.1	Thale cress	plastid	66.75	63.24
GSMUA_Achr10P...	Banana	plastid	62.89	60.14
Os08t0224300-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	55.42	53.86
Solyc07g042810.1.1	Tomato	cytosol	7.95	53.23
OQU93422	Sorghum	plastid	54.46	52.31
TraesCS7D01G283700.2	Wheat	plastid	52.77	52.02
TraesCS7B01G196800.3	Wheat	plastid	52.77	52.02
TraesCS7A01G286400.1	Wheat	plastid	52.53	51.78
Zm00001d048524_P002	Maize	plastid	52.53	51.29
HORVU7Hr1G063720.1	Barley	plastid	52.53	51.29
OQU93423	Sorghum	mitochondrion	51.57	50.47
Solyc07g042800.2.1	Tomato	plastid	26.51	40.44
VIT_06s0009g02080.t01	Wine grape	golgi, mitochondrion	6.02	25.0
Zm00001d027320_P002	Maize	plastid	53.25	22.23
VIT_08s0056g00590.t01	Wine grape	vacuole	10.84	20.09
VIT_05s0020g00350.t01	Wine grape	extracellular	4.82	16.53

Protein Annotations

EntrezGene:100267296	wikigene:100267296	MapMan:35.1	EMBL:AM483815	ProteinID:CAN70920	ProteinID:CAN70920.1
ProteinID:CBI24050	ProteinID:CBI24050.3	InterPro:CemA	ncoils:Coil	UniProt:D7T0M1	EMBL:FN595502
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0015074	GO:GO:0016020
GO:GO:0016021	EntrezGene:LOC100267296	wikigene:LOC100267296	PFAM:PF03040	PANTHER:PTHR33650	PANTHER:PTHR33650:SF1
TMHMM:TMhelix	UniParc:UPI00015C8332	ArrayExpress:VIT_11s0065g00180	EnsemblPlantsGene:VIT_11s0065g00180	EnsemblPlants:VIT_11s0065g00180.t01	RefSeq:XP_002267030
RefSeq:XP_002267030.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:13642812..13697869

Molecular Weight (calculated)

48371.8 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.266

Length

415 amino acids

Sequence
(BLAST)

001: MVLCENLIFI RRSSFHSHTH GLSLPQFTDS TRGTRRRRPL GLVHSTRPRR SWWQKFFDDD GNWLGLKDGD MVDLEESSSE EEDLSETQKF EAWKRRAEAI
101: LELREAQEDI RNQEGRRWED WLVEGSTDSH SDSDWVAGSH TGDEGGDGGD LGGIIPDKGF VESVRDLVLG REDDELLYED RVFRYASFNS AKFLAVLLII
201: PWALDFVVHD YVLMPFLDRY VKTVPLAAKM LDVRRHQKLE MVKELKIERA RFRLEVEIGK SPPLSDDEVW LELRHKALEL RDEWRLENRR AFANIWSDMV
301: FGISLFFLLY FNQSQVALLK FTGYKIINNI SDTGKAFLII LITDIFLGYH SESGWQTLLE VVVEHYGLEV DQSAITIFVC LIPVVIDACV KLWLFKFLPR
401: LSPRVSNIFR EMKRH

Best Arabidopsis Sequence Match ( AT4G31040.1 )
(BLAST)

001: MSLMSSSMVL CHCLSFSSQN PDPESSSSSL LRYKPCDSIS LWGKRRKKLW RFVPSAEKNN SHTGNNNKRR RSWWQRFFFD DDGNWLGLRD DDIVDETTEL
101: AKDDEMSDEE KFETWKRRAE AIVELREGQE EIGDSGVVAD VTKKWEDWIV DSDDSFVESW TRDSAGSDDN LELDELTIPD GGLVKMVRDM VLGAEEEDIL
201: YEDRIFRYAS SKSAKFLAVL ILIPWALDFL AHDYLLMPFL DRYVKTVPLA AQTLDVRRNQ KLEMVKELNR EKARYRLEVE IGKSPPLSDD DLWWEMRGKA
301: LELRDEWRLE NRKAFANIWS DMVFGISLFV LLYANQGRVA LLKFTGYKII NNISDTGKAF LIILITDIFL GYHSESGWET LLEIIMEHYG LEVEQSTITI
401: FICLVPVIMD ACVKLWLFKF LPRLSPRVSN IFQEMKRH

Arabidopsis Description

CemA-like proton extrusion protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.