CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72286	Canola	cytosol, endoplasmic reticulum, golgi	6.67	96.67
CDY28239	Canola	plastid	96.09	96.31
AT4G31040.1	Thale cress	plastid	88.97	88.36
CDY13408	Canola	cytosol	59.77	84.42
CDX72287	Canola	cytosol	45.52	83.9
VIT_11s0065g00180.t01	Wine grape	mitochondrion	63.68	66.75
KRH46833	Soybean	plastid	64.14	64.43
KRH74128	Soybean	plastid	63.22	63.51
GSMUA_Achr10P...	Banana	plastid	57.7	57.83
Os08t0224300-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	52.64	53.63
OQU93422	Sorghum	plastid	49.43	49.77
TraesCS7D01G283700.2	Wheat	plastid	47.82	49.41
TraesCS7B01G196800.3	Wheat	plastid	47.82	49.41
TraesCS7A01G286400.1	Wheat	plastid	47.82	49.41
Zm00001d048524_P002	Maize	plastid	48.05	49.18
HORVU7Hr1G063720.1	Barley	plastid	48.05	49.18
OQU93423	Sorghum	mitochondrion	47.82	49.06
Solyc07g042810.1.1	Tomato	cytosol	6.9	48.39
Solyc07g042800.2.1	Tomato	plastid	23.68	37.87
Zm00001d027320_P002	Maize	plastid	49.43	21.63

Protein Annotations

EnsemblPlants:CDX68718	EnsemblPlantsGene:GSBRNA2T00130405001	GO:A0A078C0N4	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CemA	ncoils:Coil	PANTHER:PTHR33650	PANTHER:PTHR33650:SF1	PFAM:PF03040	ProteinID:CDX68718
ProteinID:CDX68718.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EE249B	MapMan:35.1

Description

BnaC01g07350D

Coordinates

chrLK031789:-:915760..918177

Molecular Weight (calculated)

50720.6 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.315

Length

435 amino acids

Sequence
(BLAST)

001: MSLMSSSLVL CHCLSFTSQH SVLASSPTSL GYNRFQSISL RGKRRKKLWR FVPSAEKEDS HTGNSKRRRS WWQRFFFDDD GNWLGLRDDD IVDETAELEK
101: DDEMSDEEKF ETWKRRAEAI VELREGQEEI GDNNVGDVSK KWEDWIVDSD DSLVESWSRG DEGSEDRSEL DELTVPERGL VKMVRDMVLG VEEEDILYED
201: RVFRYASSKS AKFLAVLILI PWALDFLAHD YVLMPFLDRY VKTVPLAAQT LDVRRSQKLE MVKELNREKA RYRLEVEIGK TPPLSDGDLW WELRGKALEL
301: REEWRLENRK AFANIWSDMV FGISLFVLLY ANQGRVALLK FTGYKIINNI SDTGKAFLII LITDIFLGYH SESGWETLLE IIMEHYGLEV EQSTITIFIC
401: LVPVVIDACV KLWLFKFLPR LSPRVSNIFQ EMKRH

Best Arabidopsis Sequence Match ( AT4G31040.1 )
(BLAST)

001: MSLMSSSMVL CHCLSFSSQN PDPESSSSSL LRYKPCDSIS LWGKRRKKLW RFVPSAEKNN SHTGNNNKRR RSWWQRFFFD DDGNWLGLRD DDIVDETTEL
101: AKDDEMSDEE KFETWKRRAE AIVELREGQE EIGDSGVVAD VTKKWEDWIV DSDDSFVESW TRDSAGSDDN LELDELTIPD GGLVKMVRDM VLGAEEEDIL
201: YEDRIFRYAS SKSAKFLAVL ILIPWALDFL AHDYLLMPFL DRYVKTVPLA AQTLDVRRNQ KLEMVKELNR EKARYRLEVE IGKSPPLSDD DLWWEMRGKA
301: LELRDEWRLE NRKAFANIWS DMVFGISLFV LLYANQGRVA LLKFTGYKII NNISDTGKAF LIILITDIFL GYHSESGWET LLEIIMEHYG LEVEQSTITI
401: FICLVPVIMD ACVKLWLFKF LPRLSPRVSN IFQEMKRH

Arabidopsis Description

CemA-like proton extrusion protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.