CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72287	Canola	cytosol	64.61	84.32
Bra024027.1-P	Field mustard	golgi, plasma membrane, vacuole	38.64	64.32
CDX68718	Canola	plastid	84.42	59.77
CDY28239	Canola	plastid	82.14	58.29
AT4G31040.1	Thale cress	plastid	78.9	55.48
Solyc07g042810.1.1	Tomato	cytosol	9.74	48.39
VIT_11s0065g00180.t01	Wine grape	mitochondrion	64.94	48.19
KRH46833	Soybean	plastid	61.36	43.65
KRH74128	Soybean	plastid	61.04	43.42
Os08t0224300-01	Rice	cytosol, mitochondrion, plasma membrane, plastid	57.47	41.45
GSMUA_Achr10P...	Banana	plastid	58.12	41.24
Zm00001d048524_P002	Maize	plastid	52.92	38.35
OQU93422	Sorghum	plastid	53.57	38.19
OQU93423	Sorghum	mitochondrion	52.27	37.97
TraesCS7A01G286400.1	Wheat	plastid	51.62	37.77
TraesCS7B01G196800.3	Wheat	plastid	51.62	37.77
TraesCS7D01G283700.2	Wheat	plastid	51.62	37.77
HORVU7Hr1G063720.1	Barley	plastid	51.95	37.65
Solyc07g042800.2.1	Tomato	plastid	25.32	28.68
Zm00001d027320_P002	Maize	plastid	53.57	16.6
CDX72286	Canola	cytosol, endoplasmic reticulum, golgi	0.97	10.0

Protein Annotations

EnsemblPlants:CDY13408	EnsemblPlantsGene:GSBRNA2T00077680001	GO:A0A078FM52	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:CemA	ncoils:Coil	PANTHER:PTHR33650	PANTHER:PTHR33650:SF1	PFAM:PF03040	ProteinID:CDY13408
ProteinID:CDY13408.1	SEG:seg	UniParc:UPI0004EF05BB	UniProt:A0A078FM52	MapMan:35.2	:

Description

BnaA03g51260DBnaA03g51260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM52]

Coordinates

chrLK032035:-:118818..120279

Molecular Weight (calculated)

35687.2 Da

IEP (calculated)

4.300

GRAVY (calculated)

-0.324

Length

308 amino acids

Sequence
(BLAST)

001: MQTLFSPSQL TVSQTADNHL YDEEKFEAWK TRAEAIVELQ EDQEEIGDNA DDGDVSKKWE DWIVDSDDSL LESWSRGDEG SDDRSELGEL IVPERGLVKM
101: VRDMVLEVEE DDDILYEDRV FRYASSKSAK ILAVLILIPW ALDFVAHDYV LMPFLARYVK TVPLAAQTLD VRRSQKLEMV NELNREKARY RLEVEIGKSP
201: PLSDDDLWWE LRVKALELRE EWRLENRKAF ANIWSDMVFG ISLFALLYAN QGRVALLKFT GYKIINNISD TGKTFLIILI TDIFLGYHSE SGWETLLRDY
301: NGALWSRS

Best Arabidopsis Sequence Match ( AT4G31040.1 )
(BLAST)

001: MSLMSSSMVL CHCLSFSSQN PDPESSSSSL LRYKPCDSIS LWGKRRKKLW RFVPSAEKNN SHTGNNNKRR RSWWQRFFFD DDGNWLGLRD DDIVDETTEL
101: AKDDEMSDEE KFETWKRRAE AIVELREGQE EIGDSGVVAD VTKKWEDWIV DSDDSFVESW TRDSAGSDDN LELDELTIPD GGLVKMVRDM VLGAEEEDIL
201: YEDRIFRYAS SKSAKFLAVL ILIPWALDFL AHDYLLMPFL DRYVKTVPLA AQTLDVRRNQ KLEMVKELNR EKARYRLEVE IGKSPPLSDD DLWWEMRGKA
301: LELRDEWRLE NRKAFANIWS DMVFGISLFV LLYANQGRVA LLKFTGYKII NNISDTGKAF LIILITDIFL GYHSESGWET LLEIIMEHYG LEVEQSTITI
401: FICLVPVIMD ACVKLWLFKF LPRLSPRVSN IFQEMKRH

Arabidopsis Description

CemA-like proton extrusion protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.