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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY01372 Canola cytosol 98.18 98.18
Bra025819.1-P Field mustard cytosol 85.91 69.74
Bra015779.1-P Field mustard cytosol 55.45 62.56
Bra008242.1-P Field mustard nucleus 54.55 61.86
AT1G20450.1 Thale cress nucleus 72.27 61.15
Bra003732.1-P Field mustard nucleus 53.18 60.31
AT1G20440.1 Thale cress cytosol 67.73 56.23
VIT_18s0001g00360.t01 Wine grape cytosol 42.73 45.63
KRH60791 Soybean endoplasmic reticulum 42.73 43.93
Solyc04g082200.2.1 Tomato nucleus 37.27 39.81
PGSC0003DMT400025812 Potato cytosol 37.27 39.23
Protein Annotations
EMBL:AY178440EnsemblPlants:Bra012230.1EnsemblPlants:Bra012230.1-PEnsemblPlantsGene:Bra012230GO:GO:0006950GO:GO:0008150
GO:GO:0009415GO:GO:0009628InterPro:DehydrinInterPro:Dehydrin_CSncoils:CoilPANTHER:PTHR33346
PANTHER:PTHR33346:SF2PFAM:PF00257ProteinID:AAO48424ProteinID:AAO48424.1ScanProsite:PS00315ScanProsite:PS00823
SEG:segUniParc:UPI000254159AUniProt:M4D6X0MapMan:35.2::
Description
AT1G20450 (E=7e-028) LTI29, LTI45, ERD10 | ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding
Coordinates
chrA07:+:9172141..9172893
Molecular Weight (calculated)
24838.6 Da
IEP (calculated)
4.843
GRAVY (calculated)
-1.399
Length
220 amino acids
Sequence
(BLAST)
001: MAEEYKNASE ELKNVPEHET PKITTTEEPS AATGEVKDRG LFDFLGKKEE VKPQETTTPL ASEVEHKAQI TEEPAFVAKH EEEEHKPTLL EQLHQKHEEE
101: EENKPSLLQK LHRSNSSSSS SSEEEGEDGQ KRKKEKKKKI VEGEEKKGVM EKIKEKLPGH SEKPDDSQVV NTEAAVPVSD ETAEHPEEKK GILEKIKEKL
201: PGYHAKSSEE DEKKEKVSDA
Best Arabidopsis Sequence Match ( AT1G20450.1 )
(BLAST)
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
Arabidopsis Description
ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.