Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra024839.1-P | |
Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G20450.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
AT1G20450.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY01372 | Canola | cytosol | 98.18 | 98.18 |
Bra025819.1-P | Field mustard | cytosol | 85.91 | 69.74 |
Bra015779.1-P | Field mustard | cytosol | 55.45 | 62.56 |
Bra008242.1-P | Field mustard | nucleus | 54.55 | 61.86 |
AT1G20450.1 | Thale cress | nucleus | 72.27 | 61.15 |
Bra003732.1-P | Field mustard | nucleus | 53.18 | 60.31 |
AT1G20440.1 | Thale cress | cytosol | 67.73 | 56.23 |
VIT_18s0001g00360.t01 | Wine grape | cytosol | 42.73 | 45.63 |
KRH60791 | Soybean | endoplasmic reticulum | 42.73 | 43.93 |
Solyc04g082200.2.1 | Tomato | nucleus | 37.27 | 39.81 |
PGSC0003DMT400025812 | Potato | cytosol | 37.27 | 39.23 |
Protein Annotations
EMBL:AY178440 | EnsemblPlants:Bra012230.1 | EnsemblPlants:Bra012230.1-P | EnsemblPlantsGene:Bra012230 | GO:GO:0006950 | GO:GO:0008150 |
GO:GO:0009415 | GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | ncoils:Coil | PANTHER:PTHR33346 |
PANTHER:PTHR33346:SF2 | PFAM:PF00257 | ProteinID:AAO48424 | ProteinID:AAO48424.1 | ScanProsite:PS00315 | ScanProsite:PS00823 |
SEG:seg | UniParc:UPI000254159A | UniProt:M4D6X0 | MapMan:35.2 | : | : |
Description
AT1G20450 (E=7e-028) LTI29, LTI45, ERD10 | ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding
Coordinates
chrA07:+:9172141..9172893
Molecular Weight (calculated)
24838.6 Da
IEP (calculated)
4.843
GRAVY (calculated)
-1.399
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEYKNASE ELKNVPEHET PKITTTEEPS AATGEVKDRG LFDFLGKKEE VKPQETTTPL ASEVEHKAQI TEEPAFVAKH EEEEHKPTLL EQLHQKHEEE
101: EENKPSLLQK LHRSNSSSSS SSEEEGEDGQ KRKKEKKKKI VEGEEKKGVM EKIKEKLPGH SEKPDDSQVV NTEAAVPVSD ETAEHPEEKK GILEKIKEKL
201: PGYHAKSSEE DEKKEKVSDA
101: EENKPSLLQK LHRSNSSSSS SSEEEGEDGQ KRKKEKKKKI VEGEEKKGVM EKIKEKLPGH SEKPDDSQVV NTEAAVPVSD ETAEHPEEKK GILEKIKEKL
201: PGYHAKSSEE DEKKEKVSDA
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
Arabidopsis Description
ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.