Factsheet for PGSC0003DMT400025812

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20450.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082200.2.1	Tomato	nucleus	87.08	88.35
KRH60791	Soybean	endoplasmic reticulum	54.55	53.27
VIT_18s0001g00360.t01	Wine grape	cytosol	52.15	52.91
Bra008242.1-P	Field mustard	nucleus	43.54	46.91
CDY68984	Canola	nucleus	43.54	46.91
CDY67724	Canola	nucleus	43.54	46.91
CDX87631	Canola	nucleus	43.54	46.67
AT1G76180.1	Thale cress	nucleus	41.15	46.49
Bra003732.1-P	Field mustard	nucleus	43.06	46.39
CDX68109	Canola	nucleus	43.06	46.39
CDX73240	Canola	cytosol	44.02	46.23
Bra015779.1-P	Field mustard	cytosol	43.06	46.15
AT1G20440.1	Thale cress	cytosol	48.33	38.11
CDY01372	Canola	cytosol	39.23	37.27
Bra012230.1-P	Field mustard	cytosol	39.23	37.27
CDY31888	Canola	cytosol	37.32	36.11
AT1G20450.1	Thale cress	nucleus	44.5	35.77
CDY31469	Canola	cytosol	43.54	33.58
Bra025819.1-P	Field mustard	cytosol	43.54	33.58

Protein Annotations

EntrezGene:102589834	MapMan:35.2	ProteinID:AAB53203	ProteinID:AAB53203.1	ProteinID:AAR25792	ProteinID:AAR25792.1
ProteinID:AFW90590	ProteinID:AFW90590.1	ProteinID:AFX67019	ProteinID:AFX67019.1	EMBL:AY450632	InterPro:Dehydrin
InterPro:Dehydrin_CS	GO:GO:0006950	GO:GO:0008150	GO:GO:0009415	GO:GO:0009628	EMBL:JQ317329
EMBL:JX576234	EMBL:JX905215	UniProt:M1AM40	RefSeq:NP_001275942.1	PFAM:PF00257	EnsemblPlantsGene:PGSC0003DMG400009968
PGSC:PGSC0003DMG400009968	EnsemblPlants:PGSC0003DMT400025812	ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2	EMBL:U69633
UniParc:UPI00005287F2	SEG:seg	:	:	:	:

Description

25 kDa protein dehydrin [Source:PGSC_GENE;Acc:PGSC0003DMG400009968]

Coordinates

chr4:-:71448354..71449958

Molecular Weight (calculated)

23674.3 Da

IEP (calculated)

4.986

GRAVY (calculated)

-1.499

Length

209 amino acids

Sequence
(BLAST)

001: MADQYEQNKP SVEETVGANV EASDRGVFDF IVSKREEKPS HAHEEEAISS EFCEKVKVSE EEEHKEEKKE EKKLHRSSSS SSSSSDEEEE IGEDGQITKK
101: KKKKGLKEKI KEKISGDHKE EVKTEDTSVP VEKYEETEEK KGFLEKIKEK LPGGGHKKTE EVAAPPPPPP AAVEHEAEGK EKKGFLDKIK EKLPGYHSKT
201: EEEKEKEKD

Best Arabidopsis Sequence Match ( AT1G20440.1 )
(BLAST)

001: MAEEYKNNVP EHETPTVATE ESPATTTEVT DRGLFDFLGK KEEEVKPQET TTLESEFDHK AQISEPELAA EHEEVKENKI TLLEELQEKT EEDEENKPSV
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD

Arabidopsis Description

COR47Dehydrin COR47 [Source:UniProtKB/Swiss-Prot;Acc:P31168]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.