Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87631 | Canola | nucleus | 94.47 | 96.41 |
| Bra015779.1-P | Field mustard | cytosol | 93.47 | 95.38 |
| CDX68109 | Canola | nucleus | 82.91 | 85.05 |
| CDY67724 | Canola | nucleus | 82.91 | 85.05 |
| CDY68984 | Canola | nucleus | 81.91 | 84.02 |
| AT1G76180.1 | Thale cress | nucleus | 72.86 | 78.38 |
| CDY01372 | Canola | cytosol | 61.31 | 55.45 |
| CDY31888 | Canola | cytosol | 59.8 | 55.09 |
| VIT_18s0001g00360.t01 | Wine grape | cytosol | 56.28 | 54.37 |
| KRH60791 | Soybean | endoplasmic reticulum | 54.77 | 50.93 |
| Solyc04g082200.2.1 | Tomato | nucleus | 46.73 | 45.15 |
| CDY31469 | Canola | cytosol | 61.31 | 45.02 |
| PGSC0003DMT400025812 | Potato | cytosol | 46.23 | 44.02 |
Protein Annotations
| EnsemblPlants:CDX73240 | EnsemblPlantsGene:GSBRNA2T00103742001 | GO:A0A078C8V4 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF2 | PFAM:PF00257 |
| ProteinID:CDX73240 | ProteinID:CDX73240.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg | UniParc:UPI00000AB507 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g36880D
Coordinates
chrLK031797:-:2829394..2830390
Molecular Weight (calculated)
22440.0 Da
IEP (calculated)
5.343
GRAVY (calculated)
-1.470
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEETKNVHE HEAPKVATEE SSTATGEVTD RGLFDFLGKK KDETKPEETI DSEFEQKVHI SEPVPEVKHE EEKEEKKHSL LEKLHRSDSS SSSSSEEEGE
101: DGVKRKKKKD KKKVTATEGE VKTEEEKKGF MDKLKEKLPG HGKKPEEKPE DASPAPVVAP PVEEAHPAEK KGILEKIKEK LPGYHSKTVE EEKKDKDDH
101: DGVKRKKKKD KKKVTATEGE VKTEEEKKGF MDKLKEKLPG HGKKPEEKPE DASPAPVVAP PVEEAHPAEK KGILEKIKEK LPGYHSKTVE EEKKDKDDH
001: MAEEIKNVPE QEVPKVATEE SSAEVTDRGL FDFLGKKKDE TKPEETPIAS EFEQKVHISE PEPEVKHESL LEKLHRSDSS SSSSSEEEGS DGEKRKKKKE
101: KKKPTTEVEV KEEEKKGFME KLKEKLPGHK KPEDGSAVAA APVVVPPPVE EAHPVEKKGI LEKIKEKLPG YHPKTTVEEE KKDKE
101: KKKPTTEVEV KEEEKKGFME KLKEKLPGHK KPEDGSAVAA APVVVPPPVE EAHPVEKKGI LEKIKEKLPG YHPKTTVEEE KKDKE
Arabidopsis Description
ERD14Dehydrin ERD14 [Source:UniProtKB/Swiss-Prot;Acc:P42763]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.