CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20450.1	CDY03088	AT2G01950.1	19000166
AT1G20450.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01372	Canola	cytosol	94.44	92.73
CDY31469	Canola	cytosol	83.8	66.79
CDY67724	Canola	nucleus	54.17	60.31
CDX87631	Canola	nucleus	54.17	60.0
CDX73240	Canola	cytosol	55.09	59.8
CDY68984	Canola	nucleus	53.24	59.28
CDX68109	Canola	nucleus	52.31	58.25
AT1G20450.1	Thale cress	nucleus	69.44	57.69
AT1G20440.1	Thale cress	cytosol	67.59	55.09
VIT_18s0001g00360.t01	Wine grape	cytosol	41.67	43.69
KRH60791	Soybean	endoplasmic reticulum	42.13	42.52
Solyc04g082200.2.1	Tomato	nucleus	36.57	38.35
PGSC0003DMT400025812	Potato	cytosol	36.11	37.32

Protein Annotations

EnsemblPlants:CDY31888	EnsemblPlantsGene:GSBRNA2T00050633001	GO:A0A078H4V5	GO:GO:0006950	GO:GO:0008150	GO:GO:0009415
GO:GO:0009628	InterPro:Dehydrin	InterPro:Dehydrin_CS	ncoils:Coil	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2
PFAM:PF00257	ProteinID:CDY31888	ProteinID:CDY31888.1	ScanProsite:PS00315	ScanProsite:PS00823	SEG:seg
UniParc:UPI0004EEDF03	UniProt:A0A078H4V5	MapMan:35.2	:	:	:

Description

BnaC07g15380DBnaC07g15380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4V5]

Coordinates

chrLK032281:+:362939..364038

Molecular Weight (calculated)

24453.0 Da

IEP (calculated)

4.650

GRAVY (calculated)

-1.389

Length

216 amino acids

Sequence
(BLAST)

001: MAEEYKNASE EFKNVPEHET PKITTTEESS AVTGEVKDRG LFDFLGKKEE VKPQETTTPL ESEVEHKAQI TEEPALVAKH EEEEHKPTLL EQLHQKHEEE
101: EENKPSLFQK LHRSNSSSSS SSEEEGEDGQ KRKKKIVEGE EKKGVMEKIK EKLPGHSEKP DDSQVVNTEA AVPVSDETAE HAEEKKGILE KIKEKLPGYH
201: AKSSEEEEKK EKESDA

Best Arabidopsis Sequence Match ( AT1G20450.1 )
(BLAST)

001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD

Arabidopsis Description

ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.