Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
25464976
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20450.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400025812 | Potato | cytosol | 88.35 | 87.08 |
| VIT_18s0001g00360.t01 | Wine grape | cytosol | 52.43 | 52.43 |
| KRH60791 | Soybean | endoplasmic reticulum | 54.37 | 52.34 |
| AT1G76180.1 | Thale cress | nucleus | 44.17 | 49.19 |
| Bra008242.1-P | Field mustard | nucleus | 44.66 | 47.42 |
| CDY68984 | Canola | nucleus | 44.66 | 47.42 |
| CDY67724 | Canola | nucleus | 44.66 | 47.42 |
| CDX87631 | Canola | nucleus | 44.66 | 47.18 |
| CDX73240 | Canola | cytosol | 45.15 | 46.73 |
| Bra015779.1-P | Field mustard | cytosol | 44.17 | 46.67 |
| CDX68109 | Canola | nucleus | 43.2 | 45.88 |
| Bra003732.1-P | Field mustard | nucleus | 43.2 | 45.88 |
| AT1G20440.1 | Thale cress | cytosol | 50.0 | 38.87 |
| CDY01372 | Canola | cytosol | 39.81 | 37.27 |
| Bra012230.1-P | Field mustard | cytosol | 39.81 | 37.27 |
| CDY31888 | Canola | cytosol | 38.35 | 36.57 |
| AT1G20450.1 | Thale cress | nucleus | 46.12 | 36.54 |
| CDY31469 | Canola | cytosol | 45.15 | 34.32 |
| Bra025819.1-P | Field mustard | cytosol | 45.15 | 34.32 |
Protein Annotations
| MapMan:35.2 | InterPro:Dehydrin | InterPro:Dehydrin_CS | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009415 |
| GO:GO:0009628 | GO:GO:0009631 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0016020 | UniProt:K4BVU7 |
| PFAM:PF00257 | ScanProsite:PS00823 | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF2 | EnsemblPlantsGene:Solyc04g082200.2 | EnsemblPlants:Solyc04g082200.2.1 |
| UniParc:UPI000276648E | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:65957495..65958867
Molecular Weight (calculated)
23112.5 Da
IEP (calculated)
4.838
GRAVY (calculated)
-1.488
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQYEQNKA SVEETVGTNV EATDRGLFDF IGKKEEEKPS HAHEEEAISS ELSEKVNVSE EVEPKEEEKK LHRSNSSSSS SSDEEEEIGE DGQKIKKKKK
101: KGLKDKIKEK ISGDHKEESK AEDTSVPVEK YEETEEKKGF LDKIKEKLPG GGHKKTEEVA APPPPPPAAV EHEAEGKEKK GFLDKIKEKL PGYHSKAEEE
201: KEKEKD
101: KGLKDKIKEK ISGDHKEESK AEDTSVPVEK YEETEEKKGF LDKIKEKLPG GGHKKTEEVA APPPPPPAAV EHEAEGKEKK GFLDKIKEKL PGYHSKAEEE
201: KEKEKD
001: MAEEYKNNVP EHETPTVATE ESPATTTEVT DRGLFDFLGK KEEEVKPQET TTLESEFDHK AQISEPELAA EHEEVKENKI TLLEELQEKT EEDEENKPSV
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD
Arabidopsis Description
COR47Dehydrin COR47 [Source:UniProtKB/Swiss-Prot;Acc:P31168]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.