Factsheet for AT1G20450.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012230.1-P	Field mustard	cytosol	61.15	72.27
CDY01372	Canola	cytosol	61.15	72.27
CDY31888	Canola	cytosol	57.69	69.44
Bra025819.1-P	Field mustard	cytosol	67.69	64.94
CDY31469	Canola	cytosol	67.31	64.58
AT1G76180.1	Thale cress	nucleus	45.38	63.78
AT1G20440.1	Thale cress	cytosol	65.0	63.77
VIT_18s0001g00360.t01	Wine grape	cytosol	38.85	49.03
KRH60791	Soybean	endoplasmic reticulum	40.0	48.6
Solyc04g082200.2.1	Tomato	nucleus	36.54	46.12
PGSC0003DMT400025812	Potato	cytosol	35.77	44.5

Protein Annotations

MapMan:35.1	EntrezGene:838633	ProteinID:AAF79613.1	ProteinID:AEE29973.1	EMBL:AF083731	EMBL:AF360351
ArrayExpress:AT1G20450	EnsemblPlantsGene:AT1G20450	RefSeq:AT1G20450	TAIR:AT1G20450	RefSeq:AT1G20450-TAIR-G	EnsemblPlants:AT1G20450.1
TAIR:AT1G20450.1	EMBL:AY048208	EMBL:AY136407	EMBL:AY142491	Unigene:At.24491	EMBL:BT002131
ProteinID:CAA62448.1	ncoils:Coil	EMBL:D17714	InterPro:Dehydrin	InterPro:Dehydrin_CS	GO:GO:0001786
GO:GO:0003674	GO:GO:0003779	GO:GO:0005488	GO:GO:0005507	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009409	GO:GO:0009414	GO:GO:0009415
GO:GO:0009506	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	GO:GO:0009791
GO:GO:0010029	GO:GO:0016020	GO:GO:0016151	GO:GO:0019898	GO:GO:0031210	GO:GO:0050821
GO:GO:0090559	Symbol:LTI29	RefSeq:NP_850947.1	UniProt:P42759	PFAM:PF00257	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
ScanProsite:PS00315	ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2	UniParc:UPI00000014F7	EMBL:X77614
SEG:seg	:	:	:	:	:

Description

ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]

Coordinates

chr1:-:7087903..7089606

Molecular Weight (calculated)

29549.3 Da

IEP (calculated)

4.846

GRAVY (calculated)

-1.348

Length

260 amino acids

Sequence
(BLAST)

001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.