Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024839.1-P | |
| Bra024840.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20450.1 | Bra024839.1-P | AT2G01950.1 | 19000166 |
| AT1G20450.1 | Bra024840.1-P | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31469 | Canola | cytosol | 97.05 | 97.05 |
| Bra012230.1-P | Field mustard | cytosol | 69.74 | 85.91 |
| AT1G20450.1 | Thale cress | nucleus | 64.94 | 67.69 |
| AT1G20440.1 | Thale cress | cytosol | 64.21 | 65.66 |
| Bra015779.1-P | Field mustard | cytosol | 45.76 | 63.59 |
| Bra008242.1-P | Field mustard | nucleus | 45.39 | 63.4 |
| Bra003732.1-P | Field mustard | nucleus | 44.65 | 62.37 |
| KRH60791 | Soybean | endoplasmic reticulum | 38.01 | 48.13 |
| VIT_18s0001g00360.t01 | Wine grape | cytosol | 35.79 | 47.09 |
| Solyc04g082200.2.1 | Tomato | nucleus | 34.32 | 45.15 |
| PGSC0003DMT400025812 | Potato | cytosol | 33.58 | 43.54 |
Protein Annotations
| EnsemblPlants:Bra025819.1 | EnsemblPlants:Bra025819.1-P | EnsemblPlantsGene:Bra025819 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | ncoils:Coil | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF2 |
| PFAM:PF00257 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg | UniParc:UPI000253EF60 | UniProt:M4EAL0 |
| MapMan:35.1 | : | : | : | : | : |
Description
AT1G20450 (E=1e-029) LTI29, LTI45, ERD10 | ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10); actin binding
Coordinates
chrA06:-:8220932..8222243
Molecular Weight (calculated)
31019.7 Da
IEP (calculated)
4.707
GRAVY (calculated)
-1.508
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEYKNASE EFKNVPEHES TPKVATTEEP SATTGEVKDR GLFDFLGKKE EVKPQETTTT TTLESEFEHK AQVSEPPAFV AKHEEEEEKE HKPTLLEKLH
101: QKHEEEEEEN KPSLLQKLHR SNSSSSSSDE EGEDGEKRKK EKKKIAEEDE KTKEDRKEVM EQIREKFPHG TKTEDDTPVI ATLPVKEETV EHPEEKKGLM
201: EKIKEKLPGH SEKPEDSQVV DTAAAVPVTE KTAEHPEEKK GLMEKIKEKL PGYHAKSTEE EEKKKEKESD D
101: QKHEEEEEEN KPSLLQKLHR SNSSSSSSDE EGEDGEKRKK EKKKIAEEDE KTKEDRKEVM EQIREKFPHG TKTEDDTPVI ATLPVKEETV EHPEEKKGLM
201: EKIKEKLPGH SEKPEDSQVV DTAAAVPVTE KTAEHPEEKK GLMEKIKEKL PGYHAKSTEE EEKKKEKESD D
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
Arabidopsis Description
ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.