CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20450.1	KRH42483	AT2G01950.1	19000166
AT1G20450.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g00360.t01	Wine grape	cytosol	57.48	59.71
CDX87631	Canola	nucleus	50.47	55.38
AT1G76180.1	Thale cress	nucleus	47.66	55.14
Bra015779.1-P	Field mustard	cytosol	50.0	54.87
CDX73240	Canola	cytosol	50.93	54.77
PGSC0003DMT400025812	Potato	cytosol	53.27	54.55
Solyc04g082200.2.1	Tomato	nucleus	52.34	54.37
Bra008242.1-P	Field mustard	nucleus	49.07	54.12
CDY67724	Canola	nucleus	49.07	54.12
CDX68109	Canola	nucleus	48.6	53.61
Bra003732.1-P	Field mustard	nucleus	48.6	53.61
CDY68984	Canola	nucleus	48.6	53.61
Bra012230.1-P	Field mustard	cytosol	43.93	42.73
CDY01372	Canola	cytosol	43.93	42.73
CDY31888	Canola	cytosol	42.52	42.13
AT1G20440.1	Thale cress	cytosol	49.53	40.0
AT1G20450.1	Thale cress	nucleus	48.6	40.0
Bra025819.1-P	Field mustard	cytosol	48.13	38.01
CDY31469	Canola	cytosol	47.66	37.64

Protein Annotations

EntrezGene:100816984	MapMan:35.2	EMBL:ACUP02002140	EMBL:BT094670	UniProt:C6TAX7	ncoils:Coil
InterPro:Dehydrin	InterPro:Dehydrin_CS	EnsemblPlantsGene:GLYMA_04G009400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006950	GO:GO:0008150	GO:GO:0009414	GO:GO:0009415
GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	GO:GO:0016020	EnsemblPlants:KRH60791
ProteinID:KRH60791	ProteinID:KRH60791.1	PFAM:PF00257	ScanProsite:PS00315	ScanProsite:PS00823	PANTHER:PTHR33346
PANTHER:PTHR33346:SF2	UniParc:UPI0001B16464	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:749065..750435

Molecular Weight (calculated)

24165.8 Da

IEP (calculated)

5.599

GRAVY (calculated)

-1.509

Length

214 amino acids

Sequence
(BLAST)

001: MADETQNKYE SSEVEVQDRG VFDFLGKKKD EEDKPHPQEE VIATEFQKVT VSDQGENKHS LLEKLHRSDS SSSSSSEEEG EDGEKRKKKK KEKKGLKEKI
101: EEKIEGDHHH HKDEDTSVPV EKVEVVETAH AEEKKGFLDK IKEKLPGHKK TEEATATTPP PPPPVASLEH GEGAHHEGEA KEKKGILEKI KEKLPGYHSK
201: TEEEKEKEKE SGAH

Best Arabidopsis Sequence Match ( AT1G20440.1 )
(BLAST)

001: MAEEYKNNVP EHETPTVATE ESPATTTEVT DRGLFDFLGK KEEEVKPQET TTLESEFDHK AQISEPELAA EHEEVKENKI TLLEELQEKT EEDEENKPSV
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD

Arabidopsis Description

COR47Dehydrin COR47 [Source:UniProtKB/Swiss-Prot;Acc:P31168]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.