CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008242.1-P	Field mustard	nucleus	100.0	100.0
CDY68984	Canola	nucleus	97.94	97.94
CDX87631	Canola	nucleus	86.6	86.15
CDX73240	Canola	cytosol	85.05	82.91
AT1G76180.1	Thale cress	nucleus	77.32	81.08
CDX68109	Canola	nucleus	80.41	80.41
CDY01372	Canola	cytosol	61.86	54.55
CDY31888	Canola	cytosol	60.31	54.17
VIT_18s0001g00360.t01	Wine grape	cytosol	56.7	53.4
KRH60791	Soybean	endoplasmic reticulum	54.12	49.07
Solyc04g082200.2.1	Tomato	nucleus	47.42	44.66
CDY31469	Canola	cytosol	62.37	44.65
PGSC0003DMT400025812	Potato	cytosol	46.91	43.54

Protein Annotations

EnsemblPlants:CDY67724	EnsemblPlantsGene:GSBRNA2T00066084001	GO:A0A078JLP0	GO:GO:0006950	GO:GO:0008150	GO:GO:0009415
GO:GO:0009628	InterPro:Dehydrin	InterPro:Dehydrin_CS	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2	PFAM:PF00257
ProteinID:CDY67724	ProteinID:CDY67724.1	ScanProsite:PS00315	ScanProsite:PS00823	SEG:seg	UniParc:UPI0002545D4B
UniProt:A0A078JLP0	MapMan:35.2	:	:	:	:

Description

BnaA02g36030DBnaA02g36030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLP0]

Coordinates

chrLK036443:+:1518..2526

Molecular Weight (calculated)

21841.4 Da

IEP (calculated)

5.488

GRAVY (calculated)

-1.352

Length

194 amino acids

Sequence
(BLAST)

001: MAEETKNVVH EQEVPKVTTE ESSAEVTDRG LFDFLGKKKE ETKPEETIDS QFEHKVHISE PVVPEVKHEE EEKKHSLLEK LHRSDSSSSS SSEEEGEDGE
101: KRKKKKDKKK TATTAEGEVK TEEEKKGFMD KLKEKLPGHG KKPEDASPAA PVVAPPVEEA HPAEKKGILE KIKEKLPGYH PKTVDEVKKE KETD

Best Arabidopsis Sequence Match ( AT1G76180.1 )
(BLAST)

001: MAEEIKNVPE QEVPKVATEE SSAEVTDRGL FDFLGKKKDE TKPEETPIAS EFEQKVHISE PEPEVKHESL LEKLHRSDSS SSSSSEEEGS DGEKRKKKKE
101: KKKPTTEVEV KEEEKKGFME KLKEKLPGHK KPEDGSAVAA APVVVPPPVE EAHPVEKKGI LEKIKEKLPG YHPKTTVEEE KKDKE

Arabidopsis Description

ERD14Dehydrin ERD14 [Source:UniProtKB/Swiss-Prot;Acc:P42763]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.