Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20450.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G20450.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012230.1-P | Field mustard | cytosol | 98.18 | 98.18 |
| CDY31888 | Canola | cytosol | 92.73 | 94.44 |
| CDY31469 | Canola | cytosol | 84.55 | 68.63 |
| CDY67724 | Canola | nucleus | 54.55 | 61.86 |
| CDX87631 | Canola | nucleus | 54.55 | 61.54 |
| CDX73240 | Canola | cytosol | 55.45 | 61.31 |
| AT1G20450.1 | Thale cress | nucleus | 72.27 | 61.15 |
| CDY68984 | Canola | nucleus | 53.64 | 60.82 |
| CDX68109 | Canola | nucleus | 53.18 | 60.31 |
| AT1G20440.1 | Thale cress | cytosol | 67.27 | 55.85 |
| VIT_18s0001g00360.t01 | Wine grape | cytosol | 42.73 | 45.63 |
| KRH60791 | Soybean | endoplasmic reticulum | 42.73 | 43.93 |
| Solyc04g082200.2.1 | Tomato | nucleus | 37.27 | 39.81 |
| PGSC0003DMT400025812 | Potato | cytosol | 37.27 | 39.23 |
Protein Annotations
| EnsemblPlants:CDY01372 | EnsemblPlantsGene:GSBRNA2T00112350001 | GO:D9IUY3 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 |
| GO:GO:0009628 | InterPro:Dehydrin | InterPro:Dehydrin_CS | ncoils:Coil | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF2 |
| PFAM:PF00257 | ProteinID:CDY01372 | ProteinID:CDY01372.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg |
| UniParc:UPI0001DC1502 | UniProt:D9IUY3 | MapMan:35.2 | : | : | : |
Description
BnaA07g11450DBnaA07g11450D protein [Source:UniProtKB/TrEMBL;Acc:D9IUY3]
Coordinates
chrLK031926:+:576123..577249
Molecular Weight (calculated)
24877.6 Da
IEP (calculated)
4.792
GRAVY (calculated)
-1.415
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEYKNASE EFKNVPEHET PKITTTEEPS AATGEVKDRG LFDFLGKKEE VKPQETTTPL ASEVEHKAQI TEEPAFVAKH EEEEHKPTLL EQLHQKHEEE
101: EENKPSLLQK LHRSNSSSSS SSEEEGEDGE KRKKEKKKKM VEGDEKKGVM EKIKEKLPGH SEKPDDSQVV NTEAAVPVSD ETAEHPEEKK GILEKIKEKL
201: PGYHAKSSEE DEKKEKVSDA
101: EENKPSLLQK LHRSNSSSSS SSEEEGEDGE KRKKEKKKKM VEGDEKKGVM EKIKEKLPGH SEKPDDSQVV NTEAAVPVSD ETAEHPEEKK GILEKIKEKL
201: PGYHAKSSEE DEKKEKVSDA
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
Arabidopsis Description
ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.