Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G20450.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT1G20450.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025819.1-P | Field mustard | cytosol | 97.05 | 97.05 |
| CDY01372 | Canola | cytosol | 68.63 | 84.55 |
| CDY31888 | Canola | cytosol | 66.79 | 83.8 |
| AT1G20450.1 | Thale cress | nucleus | 64.58 | 67.31 |
| AT1G20440.1 | Thale cress | cytosol | 63.47 | 64.91 |
| CDY67724 | Canola | nucleus | 44.65 | 62.37 |
| CDX87631 | Canola | nucleus | 44.65 | 62.05 |
| CDX68109 | Canola | nucleus | 43.91 | 61.34 |
| CDY68984 | Canola | nucleus | 43.91 | 61.34 |
| CDX73240 | Canola | cytosol | 45.02 | 61.31 |
| KRH60791 | Soybean | endoplasmic reticulum | 37.64 | 47.66 |
| VIT_18s0001g00360.t01 | Wine grape | cytosol | 35.06 | 46.12 |
| Solyc04g082200.2.1 | Tomato | nucleus | 34.32 | 45.15 |
| PGSC0003DMT400025812 | Potato | cytosol | 33.58 | 43.54 |
Protein Annotations
| EnsemblPlants:CDY31469 | EnsemblPlantsGene:GSBRNA2T00047743001 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009415 | GO:GO:0009628 |
| GO:Q69BP4 | InterPro:Dehydrin | InterPro:Dehydrin_CS | PANTHER:PTHR33346 | PANTHER:PTHR33346:SF2 | PFAM:PF00257 |
| ProteinID:CDY31469 | ProteinID:CDY31469.1 | ScanProsite:PS00315 | ScanProsite:PS00823 | SEG:seg | UniParc:UPI0000401690 |
| UniProt:Q69BP4 | MapMan:35.1 | : | : | : | : |
Description
BnaC05g15780DBnaC05g15780D protein [Source:UniProtKB/TrEMBL;Acc:Q69BP4]
Coordinates
chrLK032273:-:106133..107691
Molecular Weight (calculated)
31007.7 Da
IEP (calculated)
4.820
GRAVY (calculated)
-1.494
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEYKNASE EFKNVPEHES TPKVATTEEP SATTGEVKDR GLFDFLGKKE EVKPQETTTL ESEFEHKAQV SEPPAFVAKH EEEEEREHKP TLLEKLHHKH
101: EEEEEENKPS LLQKLHRSNS SSSSSDEEGE DGEKRKKEKK KIAEEDEKTK EDRKGVMEQI REKFPHGTKT EDDTPVIATL PVKEETVEHP EEKKRLMEKI
201: KEKLPGHSEK PEDSQVVDTA AAVPVTEKTA EHPEEKKGLM GKIKEKLPGY HAKSTEEEEK KKEKESDDLE G
101: EEEEEENKPS LLQKLHRSNS SSSSSDEEGE DGEKRKKEKK KIAEEDEKTK EDRKGVMEQI REKFPHGTKT EDDTPVIATL PVKEETVEHP EEKKRLMEKI
201: KEKLPGHSEK PEDSQVVDTA AAVPVTEKTA EHPEEKKGLM GKIKEKLPGY HAKSTEEEEK KKEKESDDLE G
001: MAEEYKNTVP EQETPKVATE ESSAPEIKER GMFDFLKKKE EVKPQETTTL ASEFEHKTQI SEPESFVAKH EEEEHKPTLL EQLHQKHEEE EENKPSLLDK
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
101: LHRSNSSSSS SSDEEGEDGE KKKKEKKKKI VEGDHVKTVE EENQGVMDRI KEKFPLGEKP GGDDVPVVTT MPAPHSVEDH KPEEEEKKGF MDKIKEKLPG
201: HSKKPEDSQV VNTTPLVETA TPIADIPEEK KGFMDKIKEK LPGYHAKTTG EEEKKEKVSD
Arabidopsis Description
ERD10Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.