Factsheet for AT1G20440.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012230.1-P	Field mustard	cytosol	56.23	67.73
CDY31888	Canola	cytosol	55.09	67.59
CDY01372	Canola	cytosol	55.85	67.27
AT1G20450.1	Thale cress	nucleus	63.77	65.0
AT1G76180.1	Thale cress	nucleus	44.91	64.32
Bra025819.1-P	Field mustard	cytosol	65.66	64.21
CDY31469	Canola	cytosol	64.91	63.47
VIT_18s0001g00360.t01	Wine grape	cytosol	40.38	51.94
Solyc04g082200.2.1	Tomato	nucleus	38.87	50.0
KRH60791	Soybean	endoplasmic reticulum	40.0	49.53
PGSC0003DMT400025812	Potato	cytosol	38.11	48.33

Protein Annotations

MapMan:35.1	EntrezGene:838632	UniProt:A0A178WKA9	ProteinID:AAF79614.1	ProteinID:AEE29972.1	EMBL:AK230360
ArrayExpress:AT1G20440	EnsemblPlantsGene:AT1G20440	RefSeq:AT1G20440	TAIR:AT1G20440	RefSeq:AT1G20440-TAIR-G	EnsemblPlants:AT1G20440.1
TAIR:AT1G20440.1	EMBL:AY072392	EMBL:AY114699	ProteinID:BAA23547.1	ProteinID:CAA62449.1	Symbol:COR47
ncoils:Coil	InterPro:Dehydrin	InterPro:Dehydrin_CS	GO:GO:0003674	GO:GO:0005488	GO:GO:0005507
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0006970	GO:GO:0008150	GO:GO:0009409	GO:GO:0009414	GO:GO:0009415	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719	GO:GO:0009737	GO:GO:0010286
GO:GO:0016020	GO:GO:0016151	GO:GO:0050832	RefSeq:NP_173468.1	ProteinID:OAP18271.1	UniProt:P31168
PFAM:PF00257	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000282	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00315	ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2
UniProt:Q0WL48	UniParc:UPI0000000FE4	EMBL:X59814	SEG:seg	:	:

Description

COR47Dehydrin COR47 [Source:UniProtKB/Swiss-Prot;Acc:P31168]

Coordinates

chr1:-:7084409..7086873

Molecular Weight (calculated)

29898.3 Da

IEP (calculated)

4.439

GRAVY (calculated)

-1.249

Length

265 amino acids

Sequence
(BLAST)

001: MAEEYKNNVP EHETPTVATE ESPATTTEVT DRGLFDFLGK KEEEVKPQET TTLESEFDHK AQISEPELAA EHEEVKENKI TLLEELQEKT EEDEENKPSV
101: IEKLHRSNSS SSSSSDEEGE EKKEKKKKIV EGEEDKKGLV EKIKEKLPGH HDKTAEDDVP VSTTIPVPVS ESVVEHDHPE EEKKGLVEKI KEKLPGHHDE
201: KAEDSPAVTS TPLVVTEHPV EPTTELPVEH PEEKKGILEK IKEKLPGYHA KTTEEEVKKE KESDD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.