Factsheet for VIT_18s0001g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20450.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60791	Soybean	endoplasmic reticulum	59.71	57.48
Bra015779.1-P	Field mustard	cytosol	54.37	57.44
CDX87631	Canola	nucleus	53.88	56.92
Bra008242.1-P	Field mustard	nucleus	53.4	56.7
CDY67724	Canola	nucleus	53.4	56.7
CDX73240	Canola	cytosol	54.37	56.28
CDY68984	Canola	nucleus	52.91	56.19
AT1G76180.1	Thale cress	nucleus	50.0	55.68
Bra003732.1-P	Field mustard	nucleus	51.46	54.64
CDX68109	Canola	nucleus	51.46	54.64
Solyc04g082200.2.1	Tomato	nucleus	52.43	52.43
PGSC0003DMT400025812	Potato	cytosol	52.91	52.15
CDY01372	Canola	cytosol	45.63	42.73
Bra012230.1-P	Field mustard	cytosol	45.63	42.73
CDY31888	Canola	cytosol	43.69	41.67
AT1G20440.1	Thale cress	cytosol	51.94	40.38
AT1G20450.1	Thale cress	nucleus	49.03	38.85
Bra025819.1-P	Field mustard	cytosol	47.09	35.79
CDY31469	Canola	cytosol	46.12	35.06

Protein Annotations

EntrezGene:100254126	wikigene:100254126	MapMan:35.2	EMBL:AM472083	ProteinID:CAN66038	ProteinID:CAN66038.1
ProteinID:CCB45396	ProteinID:CCB45396.1	InterPro:Dehydrin	InterPro:Dehydrin_CS	UniProt:F6H0C4	EMBL:FN595227
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006950
GO:GO:0008150	GO:GO:0009414	GO:GO:0009415	GO:GO:0009628	GO:GO:0009631	GO:GO:0009719
GO:GO:0009737	GO:GO:0016020	EntrezGene:LOC100254126	wikigene:LOC100254126	PFAM:PF00257	ScanProsite:PS00315
ScanProsite:PS00823	PANTHER:PTHR33346	PANTHER:PTHR33346:SF2	TIGR:TC68410	UniParc:UPI00019856AA	ArrayExpress:VIT_18s0001g00360
EnsemblPlantsGene:VIT_18s0001g00360	EnsemblPlants:VIT_18s0001g00360.t01	RefSeq:XP_002285919	RefSeq:XP_002285919.1	SEG:seg	:

Description

No Description!

Coordinates

chr18:+:1297681..1298847

Molecular Weight (calculated)

23484.3 Da

IEP (calculated)

4.923

GRAVY (calculated)

-1.514

Length

206 amino acids

Sequence
(BLAST)

001: MEEEHHHSKT HECETTVVAE EAAVETKDRG IFDFLGKKEE EKPQEEVIVT DFEKVTISEP EPKVEEEEEK KHGLLEKLHR SDSSSSSSSE EEGEGGEKKK
101: KKKKDKKKKE EDTCVPVEKC DEVVPPQPEE KKGFLDKIKE KLPGQHKKAE EVPPPPPPPA ECSPSSETHE GEVKEKKGIL EKIKEKLPGY HPKTEEEKKE
201: KEKDCE

Best Arabidopsis Sequence Match ( AT1G76180.1 )
(BLAST)

001: MAEEIKNVPE QEVPKVATEE SSAEVTDRGL FDFLGKKKDE TKPEETPIAS EFEQKVHISE PEPEVKHESL LEKLHRSDSS SSSSSEEEGS DGEKRKKKKE
101: KKKPTTEVEV KEEEKKGFME KLKEKLPGHK KPEDGSAVAA APVVVPPPVE EAHPVEKKGI LEKIKEKLPG YHPKTTVEEE KKDKE

Arabidopsis Description

ERD14Dehydrin ERD14 [Source:UniProtKB/Swiss-Prot;Acc:P42763]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.