Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20997 | Canola | nucleus | 97.45 | 97.14 |
| Bra019852.1-P | Field mustard | nucleus | 75.8 | 64.67 |
| AT1G11440.1 | Thale cress | nucleus | 73.25 | 63.36 |
| KRH10699 | Soybean | nucleus | 31.53 | 32.78 |
| KRH21632 | Soybean | nucleus | 31.21 | 28.32 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 30.57 | 28.24 |
| Solyc02g079780.1.1 | Tomato | nucleus | 28.34 | 27.38 |
| PGSC0003DMT400055884 | Potato | nucleus | 27.71 | 26.85 |
Protein Annotations
| EnsemblPlants:Bra016834.1 | EnsemblPlants:Bra016834.1-P | EnsemblPlantsGene:Bra016834 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 |
| GO:GO:0070300 | InterPro:PLDrp1-like | ncoils:Coil | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | SEG:seg |
| UniParc:UPI0002546406 | UniProt:M4DK06 | MapMan:35.2 | : | : | : |
Description
AT1G11440 (E=1e-044) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 22740 Blast hits to 8622 proteins in 417 species: Archae - 22; Bacteria - 573; Metazoa - 11353; Fungi - 2147; Plants - 905; Viruses - 631; Other Eukaryotes - 7109 (source: NCBI BLink).
Coordinates
chrA08:-:20201280..20202224
Molecular Weight (calculated)
35976.5 Da
IEP (calculated)
4.051
GRAVY (calculated)
-0.915
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSFYEHYEF PYDTNQVNHL YDHNYYDNNQ QHQFGFNPMS YNSYDNWNGS EYEYETTTSA SVVYSVSTMS EPKHLFYDPS YYTTTTYESP PQFSIYCNVQ
101: GFNEPDFEEY DPTPYGGGYD IVATYGKPLP PSEKTCYPSS SAGQASPPSP PEIIAPVPLG IYDGGEKKAV KKRVTFSEPL EEAKPLETIK EEENDHQEEA
201: EEEEDHSLSN GTVQPETVDK VEVKALYVPS GYGLEATDLC EVIFGGYFPC FLRNKRRLED ENRAAEVTCW DSADSDPWKT TSDYLFGDSY PYGYEDGVGR
301: RQFEISSYGY YQRY
101: GFNEPDFEEY DPTPYGGGYD IVATYGKPLP PSEKTCYPSS SAGQASPPSP PEIIAPVPLG IYDGGEKKAV KKRVTFSEPL EEAKPLETIK EEENDHQEEA
201: EEEEDHSLSN GTVQPETVDK VEVKALYVPS GYGLEATDLC EVIFGGYFPC FLRNKRRLED ENRAAEVTCW DSADSDPWKT TSDYLFGDSY PYGYEDGVGR
301: RQFEISSYGY YQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.