Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055884 | Potato | nucleus | 85.85 | 86.11 |
| KRH10699 | Soybean | nucleus | 28.31 | 30.46 |
| KRH21632 | Soybean | nucleus | 30.77 | 28.9 |
| Bra016834.1-P | Field mustard | nucleus | 27.38 | 28.34 |
| CDY20997 | Canola | nucleus | 27.38 | 28.25 |
| CDY57038 | Canola | cytosol | 27.08 | 27.5 |
| CDY49782 | Canola | nucleus | 28.0 | 25.71 |
| AT1G11440.1 | Thale cress | nucleus | 28.31 | 25.34 |
| CDX97961 | Canola | cytosol | 25.54 | 25.3 |
| Bra019852.1-P | Field mustard | nucleus | 28.0 | 24.73 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 23.69 | 22.65 |
Protein Annotations
| EnsemblPlants:Solyc02g079780.1.1 | EnsemblPlantsGene:Solyc02g079780.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 |
| InterPro:PLDrp1-like | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | SEG:seg | UniParc:UPI0002768C11 | UniProt:K4B9J9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:44230868..44231845
Molecular Weight (calculated)
37012.8 Da
IEP (calculated)
4.159
GRAVY (calculated)
-0.982
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFYGYNDDD AGEYHWTPNF NVSYDYDAFP MSYPSYGQST NYNYYHTTQI HPQFTYSVHN SVEPKLIQYE KGADSLETRT VISCYTKELD DTQFDEYDPT
101: PYDGGFDMAQ TYGKPLPPSN EICYPRSTLK SNGLPLDGFD YGSNNLPYVN HANQLEQLQN QKKGNGVKDE QKSSSGVKEK TSFGKPAQQD QDFVIDNGKT
201: GEKPILEKPV EPLQQDQDFV VDNGSIGEYG YDYGRQLQQI PYGSGLESMD LCESLFGYWP CIAKETQRRN CNCANVVEDN SSSYNEQWKC TADYLFGNPY
301: GYGGDGGDWD CVYSNQSYYN HQQQL
101: PYDGGFDMAQ TYGKPLPPSN EICYPRSTLK SNGLPLDGFD YGSNNLPYVN HANQLEQLQN QKKGNGVKDE QKSSSGVKEK TSFGKPAQQD QDFVIDNGKT
201: GEKPILEKPV EPLQQDQDFV VDNGSIGEYG YDYGRQLQQI PYGSGLESMD LCESLFGYWP CIAKETQRRN CNCANVVEDN SSSYNEQWKC TADYLFGNPY
301: GYGGDGGDWD CVYSNQSYYN HQQQL
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.