Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97961 | Canola | cytosol | 80.51 | 86.89 |
| CDY20997 | Canola | nucleus | 69.77 | 78.41 |
| CDY57038 | Canola | cytosol | 70.06 | 77.5 |
| AT1G11440.1 | Thale cress | nucleus | 68.36 | 66.67 |
| KRH10699 | Soybean | nucleus | 29.94 | 35.1 |
| KRH21632 | Soybean | nucleus | 32.2 | 32.95 |
| Solyc02g079780.1.1 | Tomato | nucleus | 25.71 | 28.0 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 26.84 | 27.94 |
| PGSC0003DMT400055884 | Potato | nucleus | 24.01 | 26.23 |
Protein Annotations
| EnsemblPlants:CDY49782 | EnsemblPlantsGene:GSBRNA2T00093802001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 |
| InterPro:PLDrp1-like | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | ProteinID:CDY49782 | ProteinID:CDY49782.1 | SEG:seg |
| UniParc:UPI0004EE29AE | UniProt:A0A078IIM2 | MapMan:35.2 | : | : | : |
Description
BnaCnng17950DBnaCnng17950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIM2]
Coordinates
chrLK032859:+:3534..5006
Molecular Weight (calculated)
40366.9 Da
IEP (calculated)
3.922
GRAVY (calculated)
-1.086
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MANYYEHYQI PYDSNQVNSL YDHNYYDNNQ LQQFGFEPMS YNSYDPVSYN SNDPVSYNSA YNDNWNGSSE YETTSASVAY SVYTMSEPKH LFYDPNVYTT
101: YESPPQFSIY RSVQGFNEPE FEEYDPTPYG GGYDIAATYG KPLPPSVKIC YPSSTSAQGN PPSPPEVIAP VPLGIYDGGG EKKVVKKRVT FSEPLEEARP
201: LETTKQDDHQ EEEEGDEDED ESEEEDEEDD HSSSYGTTTK PESEKDDSLS YGTSKPDTED KGEVKAVYVP SGYGLEATDM CEVIFGGYFP CVLRNKRLQE
301: DQKRAAEVSC WESTDSDPWK TTSDYLFGDS YPYGYENRLE RSQFEISSYG YQRY
101: YESPPQFSIY RSVQGFNEPE FEEYDPTPYG GGYDIAATYG KPLPPSVKIC YPSSTSAQGN PPSPPEVIAP VPLGIYDGGG EKKVVKKRVT FSEPLEEARP
201: LETTKQDDHQ EEEEGDEDED ESEEEDEEDD HSSSYGTTTK PESEKDDSLS YGTSKPDTED KGEVKAVYVP SGYGLEATDM CEVIFGGYFP CVLRNKRLQE
301: DQKRAAEVSC WESTDSDPWK TTSDYLFGDS YPYGYENRLE RSQFEISSYG YQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.