Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019852.1-P | Field mustard | nucleus | 92.99 | 82.88 |
| CDY49782 | Canola | nucleus | 86.89 | 80.51 |
| CDY20997 | Canola | nucleus | 71.34 | 74.29 |
| CDY57038 | Canola | cytosol | 71.65 | 73.44 |
| AT1G11440.1 | Thale cress | nucleus | 68.29 | 61.71 |
| KRH10699 | Soybean | nucleus | 31.71 | 34.44 |
| KRH21632 | Soybean | nucleus | 32.01 | 30.35 |
| VIT_00s2705g00010.t01 | Wine grape | nucleus | 28.96 | 27.94 |
| Solyc02g079780.1.1 | Tomato | nucleus | 25.3 | 25.54 |
| PGSC0003DMT400055884 | Potato | nucleus | 24.39 | 24.69 |
Protein Annotations
| EnsemblPlants:CDX97961 | EnsemblPlantsGene:GSBRNA2T00105314001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008289 | GO:GO:0070300 |
| InterPro:PLDrp1-like | PANTHER:PTHR33971 | PANTHER:PTHR33971:SF3 | ProteinID:CDX97961 | ProteinID:CDX97961.1 | SEG:seg |
| UniParc:UPI0004EEFE9C | MapMan:35.2 | : | : | : | : |
Description
BnaA06g07120D
Coordinates
chrLK031902:+:260844..262013
Molecular Weight (calculated)
37794.0 Da
IEP (calculated)
3.943
GRAVY (calculated)
-1.144
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MANYYEHYQI PYDFNQVNNN LCDHNYYDNN HHQHAYYDNW NGSSEYERTS ASVAYSIYTM SEPKHLFYDP NVYTTYESPP QFSIYRSVQG FNEPEFEEYD
101: PTPYGGGYDI AATYGKPLPP SEKICYPPST SAQGNPPSPP EVIAPVPLGV YDGGEKKVVK KRVTFSEPLE EARPLETTKE DDHQEEEEDG EEWDEDEDED
201: EEEEEEDDSS SYVTTKPEKD SSSYGTTTQP DAEDKGEVKA VYVPSGYGLE ATDMCEVIFG GYFPCVLRNK RLQEDQNRAA EVSCWESTDS DPWKTTSDYL
301: FGDSYPYGYE NRLERSQFEI SSYGYQRY
101: PTPYGGGYDI AATYGKPLPP SEKICYPPST SAQGNPPSPP EVIAPVPLGV YDGGEKKVVK KRVTFSEPLE EARPLETTKE DDHQEEEEDG EEWDEDEDED
201: EEEEEEDDSS SYVTTKPEKD SSSYGTTTQP DAEDKGEVKA VYVPSGYGLE ATDMCEVIFG GYFPCVLRNK RLQEDQNRAA EVSCWESTDS DPWKTTSDYL
301: FGDSYPYGYE NRLERSQFEI SSYGYQRY
001: MANFYENYQS PYDYNQVNNL YDQNHYHYNQ QQQQLGFEPM SYNYYNWNES ESESEYVAYS GYDDPMSYNC YNWNGSESET TSAYVAYSVS TMSEPKHLFY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
101: DPNLYTTYES PPQFSIYCSV ASALDFNEPE FDEYDPTPYG GGYDVVATYG KPLPPSVETC YPCSTAPHAK APSPPEIIAP VPLGIYDGGQ KNVVKKRVSF
201: AEPVEEVKPI ETIKEQEQEQ DEDYDEESED EDDGDDDDEE EEEGDEEAKE EEKDHSSSYG NEEYEVVDKG EVKALYVPSG YGLEATDLCE VIFGGYFPCV
301: LRNKRRQEDE QDRGAAVSCW ESNDSDPWKT TSDHLFGDSY PYGYENRSER NQFEVSSYGY RMY
Arabidopsis Description
At1g11440 [Source:UniProtKB/TrEMBL;Acc:Q9LPZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.